List of works by Jason D. Buenrostro

A flexible approach for highly multiplexed candidate gene targeted resequencing

scientific article

A microRNA expression and regulatory element activity atlas of the mouse immune system

scientific article published on 07 June 2021

ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing

scientific article

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide ⬇️

scientific article

Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields

scientific article published on 31 July 2020

Arctic mustard flower color polymorphism controlled by petal-specific downregulation at the threshold of the anthocyanin biosynthetic pathway

scientific article

Assessment of computational methods for the analysis of single-cell ATAC-seq data

scientific article published on 18 November 2019

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

scientific article published on 20 October 2020

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans.

scientific article published on 15 November 2017

Chromatin accessibility dynamics reveal novel functional enhancers inC. elegans

Comprehensive and quantitative mapping of RNA-protein interactions across a transcribed eukaryotic genome

scientific article published on 21 March 2017

Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms

scientific article published on 28 December 2016

Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms

Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence

scientific article published on 31 March 2021

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

scientific article published on 28 October 2021

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram ⬇️

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Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

scientific article published on 13 December 2018

Direct, High-Throughput Measurement of Quantitative RNA Affinity Landscapes

Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility

scientific article published on 24 June 2019

Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing

scientific article

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

scientific article published on 07 July 2020

Epigenomics of human CD8 T cell differentiation and aging

scientific article published on 17 February 2017

Exome sequencing identifies a DNAJB6 mutation in a family with dominantly-inherited limb-girdle muscular dystrophy

scientific article

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

article

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types.

scientific article published on 9 April 2018

Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells

scientific article published on 22 January 2020

In situ genome sequencing resolves DNA sequence and structure in intact biological samples

scientific article published on 31 December 2020

Induction and transcriptional regulation of the co-inhibitory gene module in T cells

scientific article published in Nature

Inference and effects of barcode multiplets in droplet-based single-cell assays

scientific article published on 13 February 2020

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.

scientific article published on 25 April 2018

Interrogation of human hematopoiesis at single-cell and single-variant resolution

scholarly article published 28 January 2018

Interrogation of human hematopoiesis at single-cell and single-variant resolution

scientific article published on 11 March 2019

Leukemia-Associated Cohesin Mutants Dominantly Enforce Stem Cell Programs and Impair Human Hematopoietic Progenitor Differentiation

scientific article

Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics

scientific article published on 28 February 2019

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

scientific article published on 15 August 2016

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

scientific article published on 12 August 2020

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naïve Pluripotency

Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

scientific article published on 16 August 2018

PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genes

scientific article published on 12 June 2017

Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex

scientific article published in 2022

Protocol for single-cell ATAC sequencing using combinatorial indexing in mouse lung adenocarcinoma

scientific article published on 03 June 2021

Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries

scientific article (publication date: 7 November 2013)

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

scientific article

Rapid chromatin repression by Aire provides precise control of immune tolerance

scientific article published on 15 January 2018

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution

scientific article published on 17 December 2018

Single-cell chromatin accessibility reveals principles of regulatory variation

scientific article

Single-cell epigenomic variability reveals functional cancer heterogeneity

scientific article published on 24 January 2017

Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

scientific article published on 23 April 2019

Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

scientific article published on 15 December 2021

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

scientific article

Sustained Activation of AMPK Enhances Differentiation of Human iPSC-Derived Cardiomyocytes via Sirtuin Activation

scientific article published on 28 June 2020

Systematic benchmarking of single-cell ATAC-sequencing protocols

scientific article published in 2023

TOP2 synergizes with BAF chromatin remodeling for both resolution and formation of facultative heterochromatin

scientific article published on 27 February 2017

The Molecular and Functional Foundations of Conducive Somatic Cell Reprogramming to Ground State Pluripotency

The cis-Regulatory Atlas of the Mouse Immune System

scientific article published on 24 January 2019

Transcript-indexed ATAC-seq for precision immune profiling.

scientific article published on 23 April 2018

Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

scientific article published on 01 June 2019

Transient acquisition of pluripotency during somatic cell transdifferentiation with iPSC reprogramming factors

scientific article

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

scientific article

Ultrasensitive detection of rare mutations using next-generation targeted resequencing

scientific article published on 19 October 2011

chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

scientific article

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