List of works by Jacek Czub

Comparative molecular dynamics study of lipid membranes containing cholesterol and ergosterol

scientific article published on 6 January 2006

Correlation between the number of Pro-Ala repeats in the EmrA homologue of Acinetobacter baumannii and resistance to netilmicin, tobramycin, imipenem and ceftazidime.

scientific article published on 21 October 2016

Dominant Pathways of Adenosyl Radical-Induced DNA Damage Revealed by QM/MM Metadynamics.

scientific article

Effect of chemical structure on complexation efficiency of aromatic drugs with cyclodextrins: The example of dibenzazepine derivatives

scientific article published on 18 August 2020

Effect of osmolytes on the thermal stability of proteins: replica exchange simulations of Trp-cage in urea and betaine solutions

scientific article published on 01 April 2018

Erratum to: Hydration of amino acids: FTIR spectra and molecular dynamics studies

scientific article published on 12 May 2016

How do sterols determine the antifungal activity of amphotericin B? Free energy of binding between the drug and its membrane targets

scientific article published on 2 December 2010

How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1.

scientific article published on 15 June 2017

Hydration of amino acids: FTIR spectra and molecular dynamics studies.

scientific article

Influence of a lipid bilayer on the conformational behavior of amphotericin B derivatives - A molecular dynamics study

scientific article published on 9 January 2009

Interaction of amphotericin B and its selected derivatives with membranes: molecular modeling studies

scientific article published on January 2006

Interactions of amphotericin B derivatives with lipid membranes—A molecular dynamics study

article

Intercalation complex of imidazoacridinone C-1311, a potential anticancer drug, with DNA helix d(CGATCG)2: stereostructural studies by 2D NMR spectroscopy

scientific article published on 25 July 2015

Intramolecular transformation of an antifungal antibiotic nystatin A1 into its isomer, iso-nystatin A1 - structural and molecular modeling studies.

scientific article

Iron-Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein-Protein Interaction

scientific article

Keep It Flexible: Driving Macromolecular Rotary Motions in Atomistic Simulations with GROMACS.

scientific article published on 31 March 2011

Localization and Orientation of Xanthophylls in a Lipid Bilayer

scientific article

Mechanism of Binding of Antifungal Antibiotic Amphotericin B to Lipid Membranes: An Insight from Combined Single-Membrane Imaging, Microspectroscopy, and Molecular Dynamics

scientific article published on 20 August 2018

Mechanochemical Energy Transduction during the Main Rotary Step in the Synthesis Cycle of F1-ATPase.

scientific article

Membrane Sterols Modulate the Binding Mode of Amphotericin B without Affecting Its Affinity for a Lipid Bilayer

scientific article published on 30 March 2016

Modulation of Amphotericin B Membrane Interaction by Cholesterol and ErgosterolA Molecular Dynamics Study

article

Molecular aspects of the interaction between amphotericin B and a phospholipid bilayer: molecular dynamics studies.

scientific article published on 30 April 2004

Molecular basis of the osmolyte effect on protein stability: a lesson from the mechanical unfolding of lysozyme

scientific article

Molecular dynamics simulations reveal the balance of forces governing the formation of a guanine tetrad-a common structural unit of G-quadruplex DNA.

scientific article published on 14 March 2016

Molecular mechanism of proton-coupled ligand translocation by the bacterial efflux pump EmrE

scientific article published on 07 October 2021

Molecular modelling of membrane activity of amphotericin B, a polyene macrolide antifungal antibiotic.

scientific article

Molecular recognition in complexes of TRF proteins with telomeric DNA

scientific article (publication date: 2014)

Molywood: streamlining the design and rendering of molecular movies

scientific article published on 23 June 2020

Monosaccharides as internal probes for the determination of the absolute configuration of 2-butanol

scientific article published in February 2006

On the possibility of the amphotericin B-sterol complex formation in cholesterol- and ergosterol-containing lipid bilayers: a molecular dynamics study

scientific article published in December 2009

Role of cholesterol in substrate recognition by ...-secretase

Role of the disulfide bond in stabilizing and folding of the fimbrial protein DraE from uropathogenic Escherichia coli

scientific article published on 24 July 2017

Rotation triggers nucleotide-independent conformational transition of the empty β subunit of F₁-ATPase.

scientific article

Self-association of amphotericin B: spontaneous formation of molecular structures responsible for the toxic side effects of the antibiotic.

scientific article published on 21 November 2014

Specific Binding of Cholesterol to the Amyloid Precursor Protein: Structure of the Complex and Driving Forces Characterized in Molecular Detail

scientific article published on 13 February 2015

Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70

scientific article published on 15 May 2019

Telomere uncapping by common oxidative guanine lesions: Insights from atomistic models

scientific article published on 10 January 2020

The Product of Matrix Metalloproteinase Cleavage of Doxorubicin Conjugate for Anticancer Drug Delivery: Calorimetric, Spectroscopic, and Molecular Dynamics Studies on Peptide-Doxorubicin Binding to DNA

scientific article published on 21 September 2020

The effect of sterols on amphotericin B self-aggregation in a lipid bilayer as revealed by free energy simulations

scientific article published on April 2013

The mechanism of overcoming multidrug resistance (MDR) of fungi by amphotericin B and its derivatives

scientific article published on 01 July 2007

Thermodynamics and kinetics of amphotericin B self-association in aqueous solution characterized in molecular detail

scientific article published on 8 January 2016

Torsional elasticity and energetics of F1-ATPase

scientific article

Two-step mechanism of J-domain action in driving Hsp70 function

scientific article published on 01 June 2020

Why do G-quadruplexes dimerize through the 5'-ends? Driving forces for G4 DNA dimerization examined in atomic detail

scientific article published on 20 September 2019

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