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List of works by Derrick E Fouts

221. Newly-Named Klebsiella aerogenes Is Associated with Poor Clinical Outcomes Relative to Enterobacter cloacae Complex in Patients with Bloodstream Infection

scientific article published on 23 October 2019

2385. Ceftazidime–Avibactam in Combination With Fosfomycin: A Novel Therapeutic Strategy Against Multidrug-Resistant Pseudomonas aeruginosa

A comprehensive and contemporary "snapshot" of β-lactamases in carbapenem resistant Acinetobacter baumannii

scientific article published on 16 October 2020

A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii

scientific article published on 21 July 2015

A pseudomonas syringae pv. tomato DC3000 Hrp (Type III secretion) deletion mutant expressing the Hrp system of bean pathogen P. syringae pv. syringae 61 retains normal host specificity for tomato

scientific article published on 01 January 2003

ARGONAUT II - In vitro activity of plazomicin against carbapenemase-producing Klebsiella pneumoniae

scientific article published on 09 March 2020

ARGONAUT-I: Activity of cefiderocol (S-649266), a siderophore cephalosporin, against Gram-negative bacteria including carbapenem resistant nonfermenters and Enterobacteriaceae with defined extended-spectrum β-lactamases and carbapenemases

scientific article published on 21 December 2018

AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates

scientific article published on 18 July 2020

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

scientific article

Bacteriophage functional genomics and its role in bacterial pathogen detection

scientific article published on 21 March 2013

Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease

scientific article published on 13 November 2019

Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins

scientific article published on 17 June 2019

Ceftazidime-Avibactam in Combination With Fosfomycin: A Novel Therapeutic Strategy Against Multidrug-Resistant Pseudomonas aeruginosa

scientific article published on 01 July 2019

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

scientific article published on 20 July 2020

Characterization of the AmpC β-Lactamase from Burkholderia multivorans.

scientific article published on 24 September 2018

Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing

Clostridium perfringens bacteriophages ΦCP39O and ΦCP26F: genomic organization and proteomic analysis of the virions

scientific article

Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs

scientific article

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

scientific article

Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

scientific article

Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes

article

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

scientific article

Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1

scientific article published on 23 July 2020

Complete Genome Sequence of Staphylococcus aureus Phage SA75, Isolated from Goat Feces

scientific article published on 16 April 2020

Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Strain W83.

scientific article published in January 2004

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice

scientific article published in 2008

Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

scientific article

Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1.

scientific article published on 13 October 2006

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.

scientific article

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in from Neonates in a Nigerian Hospital

scientific article published in 2019

Enteric dysbiosis associated with a mouse model of alcoholic liver disease

scientific article

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computati

scientific article published on 01 May 2018

Environmental genome shotgun sequencing of the Sargasso Sea

scientific article (publication date: 2 April 2004)

GGRaSP: A R-package for selecting representative genomes using Gaussian mixture models

scientific article published on 14 April 2018

Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus.

scientific article published on 16 October 2017

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

scientific article

Genome Sequences of Three Frequently Used Listeria monocytogenes and Listeria ivanovii Strains

scientific article published on May 2014

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains

scientific article published on 22 January 2015

Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937

scientific article

Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor

scientific article

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel.

scientific article published on 19 June 2018

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)

scientific article

HSV-1 clinical isolates with unique in vivo and in vitro phenotypes and insight into genomic differences

scientific article published on 13 October 2016

In Vitro Activity of a Novel Siderophore-Cephalosporin LCB10-0200 (GT-1), and LCB10-0200/Avibactam, against Carbapenem-Resistant Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa Strains at a Tertiary Hospi

scientific article published in 2021

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus

scientific article published on 13 June 2008

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article

Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury.

scientific article

Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation

scientific article published in February 2016

Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease

scientific article published on 08 July 2020

Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice

scientific article published on 14 April 2019

Intestinal fungi contribute to development of alcoholic liver disease.

scientific article published on 22 May 2017

Intestinal permeability, microbial translocation, changes in duodenal and fecal microbiota, and their associations with alcoholic liver disease progression in humans

scientific article published on 26 June 2020

LOCUST: a custom sequence locus typer for classifying microbial isolates

scientific article published on 27 January 2017

Large-scale comparative analysis of microbial pan-genomes using PanOCT.

scientific article

Leptospiral pathogenomics

scientific article

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

scientific article published in January 2005

Modulation of the intestinal bile acid-FXR-FGF15 axis improves alcoholic liver disease in mice.

scientific article published on 21 November 2017

Monitoring Ceftazidime-Avibactam (CAZ-AVI) and Aztreonam (ATM) Concentrations in the Treatment of a Bloodstream Infection Caused by a Multidrug-Resistant Enterobacter sp. Carrying both KPC-4 and NDM-1 Carbapenemases

scientific article published on 05 December 2019

Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells.

scientific article published on 5 June 2018

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

scientific article

Newly-named Klebsiella aerogenes (formerly Enterobacter aerogenes) is Associated with Poor Clinical Outcomes Relative to other Enterobacter Species in Patients with Bloodstream Infection

scientific article published on 03 June 2020

Next generation sequencing technologies and the changing landscape of phage genomics

scientific article published on July 2012

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen

scientific article (publication date: 2012)

OMeta: an ontology-based, data-driven metadata tracking system

scientific article published on 07 January 2019

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.

scientific article

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species ⬇️

scientific article published on August 16, 2012

Pathogenomic inference of virulence-associated genes in Leptospira interrogans

scientific article

Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequences

scientific article

Population Structure, Molecular Epidemiology, and β-Lactamase Diversity among Stenotrophomonas maltophilia Isolates in the United States

scientific article published on 02 July 2019

Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus

scientific article published on 12 December 2017

Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire

article

Sequence heterogeneity of the PenA carbapenemase in clinical isolates of Burkholderia multivorans

scientific article published on 18 June 2018

Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry

scientific article published on May 2006

Sequencing viral genomes from a single isolated plaque

scientific article

Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice

scientific article

The Bacillus anthracis chromosome contains four conserved, excision-proficient, putative prophages

scientific article published on 6 April 2006

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

scientific article

The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1

scientific article

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article

The odd one out: Bacillus ACT bacteriophage CP-51 exhibits unusual properties compared to related Spounavirinae W.Ph. and Bastille

scientific article published on 08 July 2014

What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira

scientific article published on 18 February 2016

Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity

scientific article

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity

scientific article published on 28 May 2013

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