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List of works by Dietmar Rieder

A Variant of a Killer Cell Immunoglobulin-like Receptor Is Associated with Resistance to PD-1 Blockade in Lung Cancer

scientific article published on 14 February 2019

A new platform linking chromosomal and sequence information

scientific article published on 10 May 2007

Adoptive T Cell Therapy: New Avenues Leading to Safe Targets and Powerful Allies

scientific article published on 09 October 2018

Analysis of High-Throughput RNA Bisulfite Sequencing Data

scientific article

Arxes: retrotransposed genes required for adipogenesis

scientific journal article

Bisulfite Sequencing of RNA for Transcriptome-Wide Detection of 5-Methylcytosine

scientific article published on 01 January 2019

CHD1 controls H3.3 incorporation in adult brain chromatin to maintain metabolic homeostasis and normal lifespan

scientific article published on 01 October 2021

Cardiopulmonary recovery after COVID-19 - an observational prospective multi-center trial

scientific article published on 10 December 2020

ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.

scientific article published on 29 January 2004

Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories.

scientific article

Correction to: Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

scientific article published on 29 July 2019

Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseq

scientific article published on 22 June 2019

Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain.

scientific article published on 05 January 2017

FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation

scientific article published on 30 July 2019

Generic features of tertiary chromatin structure as detected in natural chromosomes

scientific article published in November 2004

Genes regulated by SATB2 during neurodevelopment contribute to schizophrenia and educational attainment

scientific article published on 24 July 2018

Guadecitabine Plus Ipilimumab in Unresectable Melanoma: The NIBIT-M4 Clinical Trial

scientific article published on 17 September 2019

Impaired Contextual Fear Extinction Learning is Associated with Aberrant Regulation of CHD-Type Chromatin Remodeling Factors

scientific article

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

scientific article published on 24 May 2019

NAT8L (N-acetyltransferase 8-like) accelerates lipid turnover and increases energy expenditure in brown adipocytes

scientific article published on 23 October 2013

NeoFuse: predicting fusion neoantigens from RNA sequencing data

scientific article published on 01 April 2020

Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy

scientific article published on 28 November 2017

Next-generation computational tools for interrogating cancer immunity

scientific article published on 12 September 2019

Nr4a1 is required for fasting-induced down-regulation of Pparγ2 in white adipose tissue

scientific article

Nuclear receptor NR2F6 inhibition potentiates responses to PD-L1/PD-1 cancer immune checkpoint blockade.

scientific article published on 18 April 2018

Organization of chromatin and histone modifications at a transcription site.

scientific article

Osmium-Mediated Transformation of 4-Thiouridine to Cytidine as Key To Study RNA Dynamics by Sequencing.

scientific article published on 17 August 2017

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.

scientific article published in January 2017

Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ.

scientific article published on 15 June 2010

Satb2 determines miRNA expression and long-term memory in the adult central nervous system.

scientific article

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

scientific article published on 14 April 2020

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

scientific article published on 02 July 2020

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy

scientific article

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution.

scientific article published on 2 January 2018

Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL)

scientific article published on 28 February 2020

Thiouridine-to-Cytidine Conversion Sequencing (TUC-Seq) to Measure mRNA Transcription and Degradation Rates

scientific article published on 01 January 2020

Transcription factories

scientific article

Tumour-infiltrating lymphocytes (TILs) and BRCA-like status in stage III breast cancer patients randomised to adjuvant intensified platinum-based chemotherapy versus conventional chemotherapy

scientific article published on 16 January 2020

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis

scientific article

meRanTK: methylated RNA analysis ToolKit.

scientific article published on 4 November 2015

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