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List of works by Karel Šimek

A freshwater radiation of diplonemids

scientific article published on 23 August 2020

Aerobic Anoxygenic Photosynthesis Is Commonly Present within the Genus Limnohabitans.

scientific article published on 13 October 2017

Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues

scientific article published on 19 April 2010

Alga-derived substrates select for distinct Betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains

scientific article

Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition

scientific article published on 01 August 2002

Assessing Niche Separation among Coexisting Limnohabitans Strains through Interactions with a Competitor, Viruses, and a Bacterivore.

scientific article published in June 2010

Assessing niche separation among coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore

scientific article

Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations

scientific article published on 04 March 2020

Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates

scientific article published on 12 December 2017

Broad Habitat Range of the Phylogenetically Narrow R-BT065 Cluster, Representing a Core Group of the Betaproteobacterial Genus Limnohabitans.

scientific article published in June 2010

Broad habitat range of the phylogenetically narrow R-BT065 cluster, representing a core group of the Betaproteobacterial genus Limnohabitans.

scientific article

Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes

scientific article published on 18 June 2020

Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats

scientific article

Correction to: Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

article

Correction: The Diversity of the Genus, an Important Group of Freshwater Bacterioplankton, by Characterization of 35 Isolated Strains

Cryptophyta as major bacterivores in freshwater summer plankton

scientific article published on 20 February 2018

Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS)

scientific article published on 06 July 2018

Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria.

scientific article published on 04 April 2013

Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach.

scientific article published on 7 January 2017

Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa.

scientific article published on 10 September 2016

Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir

scientific article published on 29 December 2004

Extracellular phosphatase activity of natural plankton studied with ELF97 phosphate: fluorescence quantification and labelling kinetics

scientific article published in June 2003

Fluorescently Labeled Bacteria as a Tracer to Reveal Novel Pathways of Organic Carbon Flow in Aquatic Ecosystems

scientific article published on 13 September 2019

Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of fluorescence in situ hybridization

scientific article

Genome sequences of two freshwater betaproteobacterial isolates, Limnohabitans species strains Rim28 and Rim47, indicate their capabilities as both photoautotrophs and ammonia oxidizers.

scientific article published on November 2012

Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community.

scientific article published in March 2007

Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi

scientific article published on 02 October 2018

Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

article

Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir

scientific article

Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains.

scientific article published on 9 December 2015

Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans.

scientific article

Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake

scientific article published on 11 August 2009

Limnohabitans planktonicus sp. nov. and Limnohabitans parvus sp. nov., planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans

scientific article

Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions

scientific article published on 11 August 2015

Massive occurrence of heterotrophic filaments in acidified lakes: seasonal dynamics and composition.

scientific article

Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir

scientific article published in September 2006

Meeting report: ALTER-Net Workshop about the "Application of Molecular Techniques to Study Biodiversity, Structure and Function of Planktonic Communities in Lakes" at Blanes, Spain, February 15-16, 2007.

scientific article published on 19 July 2007

Modulation of microbial predatorâ prey dynamics by phosphorus availability: Growth patterns and survival strategies of bacterial phylogenetic clades

scientific article published on 24 January 2007

Patterns of Limnohabitans microdiversity across a large set of freshwater habitats as revealed by Reverse Line Blot Hybridization.

scientific article

Prey selectivity of bacterivorous protists in different size fractions of reservoir water amended with nutrients

scientific article published in August 2006

Prey-Specific Growth Responses of Freshwater Flagellate Communities Induced by Morphologically Distinct Bacteria from the Genus Limnohabitans

scientific article published on 15 May 2015

Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms

scientific article published on 01 October 2007

Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria.

scientific article published on 30 August 2017

Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity.

scientific article published in March 2007

The Effect of River Water Circulation on the Distribution and Functioning of Reservoir Microbial Communities as Determined by a Relative Distance Approach

The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with Its Endosymbiotic Algae (Micractinium sp.), Living in Traps of a Carnivorous Aquatic Plant

scientific article

The Limnohabitans Genus Harbors Generalistic and Opportunistic Subtypes: Evidence from Spatiotemporal Succession in a Canyon-Shaped Reservoir

scientific article published on 17 October 2017

The diversity of the Limnohabitans genus, an important group of freshwater bacterioplankton, by characterization of 35 isolated strains

scientific article

The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living polynucleobacter population

scientific article published on 20 March 2012

Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake

scientific article published on 7 January 2008

Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach

scientific article

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