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List of works by Jakob Pernthaler

A global network of coexisting microbes from environmental and whole-genome sequence data

scientific article

A novel ion-exclusion chromatography-mass spectrometry method to measure concentrations and cycling rates of carbohydrates and amino sugars in freshwaters

scientific article published on 16 September 2014

A small population of planktonic Flavobacteria with disproportionally high growth during the spring phytoplankton bloom in a prealpine lake

scientific article published on 10 July 2009

Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency

scientific article

Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages

scientific article published in March 2004

Activity of metazoa governs biofilm structure formation and enhances permeate flux during Gravity-Driven Membrane (GDM) filtration.

scientific article

Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues

scientific article published on 19 April 2010

Alteration of chromophoric dissolved organic matter by solar UV radiation causes rapid changes in bacterial community composition

scientific article

Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition

scientific article published on 01 August 2002

An annual cycle of dimethylsulfoniopropionate-sulfur and leucine assimilating bacterioplankton in the coastal NW Mediterranean

scientific article published in October 2007

An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization

scientific article

Antibiotic effects of three strains of chrysophytes (Ochromonas, Poterioochromonas) on freshwater bacterial isolates

scientific article published on 23 October 2009

Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.

scientific article

Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality?

scientific article

Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study. ⬇️

scientific article published on 5 March 2018

Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization

scientific article

Automated quantification and sizing of unbranched filamentous cyanobacteria by model-based object-oriented image analysis

scientific article

Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations

scientific article published on 04 March 2020

Bacterial communities associated with benthic organic matter in headwater stream microhabitats

scientific article

Bacterial community structure and dissolved organic matter in repeatedly flooded subsurface karst water pools.

scientific article

Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes

scientific article published on 16 June 2015

Bacterial epibionts of Daphnia: a potential route for the transfer of dissolved organic carbon in freshwater food webs.

scientific article

Biodegradation of microcystins during gravity-driven membrane (GDM) ultrafiltration

scientific article

Biomass addition alters community assembly in ultrafiltration membrane biofilms

scientific article published on 14 July 2020

Bloom of filamentous bacteria in a mesotrophic lake: identity and potential controlling mechanism

scientific article published on October 2004

Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean.

scientific article

Coaggregation in a microbial predator–prey system affects competition and trophic transfer efficiency

article

Colonization of overlaying water by bacteria from dry river sediments

scientific article

Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.

scientific article published on July 2004

Comparative effects of nodularin and microcystin-LR in zebrafish: 1. Uptake by organic anion transporting polypeptide Oatp1d1 (Slco1d1).

scientific article published on February 2016

Comparative effects of nodularin and microcystin-LR in zebrafish: 2. Uptake and molecular effects in eleuthero-embryos and adult liver with focus on endoplasmic reticulum stress

scientific article published on 8 December 2015

Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea

scientific article published on February 2002

Competition and niche separation of pelagic bacteria in freshwater habitats

scientific article

Concentration-dependent patterns of leucine incorporation by coastal picoplankton

scientific article

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.

scientific article published on May 2005

Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach.

scientific article published on 7 January 2017

Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters

scientific article

Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore

scientific article published on 25 August 2015

Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon

scientific article

Efficiency of fluorescence in situ hybridization for bacterial cell identification in temporary river sediments with contrasting water content

scientific article published on 23 April 2007

Enrichment of Omnivorous Cercozoan Nanoflagellates from Coastal Baltic Sea Waters ⬇️

scientific article published on September 26, 2011

Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon.

scientific article published on 15 February 2013

Fate of heterotrophic microbes in pelagic habitats: focus on populations

scientific article

Flow sorting of marine bacterioplankton after fluorescence in situ hybridization

scientific article

Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples

scientific article

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

scientific article

Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria.

scientific article

Fluorescence in situ hybridization for the identification of environmental microbes

scientific article published in January 2007

Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon

scientific article published on 17 February 2013

Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming

scientific article published on 8 July 2012

High local and global diversity of Flavobacteria in marine plankton

scientific article

High-throughput determination of dissolved free amino acids in unconcentrated freshwater by ion-pairing liquid chromatography and mass spectrometry

scientific article published on 17 February 2016

Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton.

scientific article

In situ enzyme activity in the dissolved and particulate fraction of the fluid from four pitcher plant species of the genus Nepenthes

scientific article published in 2011

In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.

scientific article published on 13 December 2012

Incorporation of glucose under anoxic conditions by bacterioplankton from coastal North Sea surface waters

scientific article published on April 2005

Integrating phylogeny, geographic niche partitioning and secondary metabolite synthesis in bloom-forming Planktothrix

scientific article published on 17 March 2015

Karst pools in subsurface environments: collectors of microbial diversity or temporary residence between habitat types

scientific article

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.

scientific article

Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment

scientific article published on 6 June 2017

Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence?

scientific article

Mass effects meet species sorting: transformations of microbial assemblages in epiphreatic subsurface karst water pools

scientific article

Members of a readily enriched beta-proteobacterial clade are common in surface waters of a humic lake

scientific article

Microbes enriched in seawater after addition of coral mucus

scientific article published on 14 March 2008

Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria

scientific article published on 13 October 2017

Molecular effects of the cyanobacterial toxin cyanopeptolin (CP1020) occurring in algal blooms: global transcriptome analysis in zebrafish embryos

scientific article

Network of Interactions Between Ciliates and Phytoplankton During Spring

scientific article

Phenology of cryptomonads and the CRY1 lineage in a coastal brackish lagoon (Vistula Lagoon, Baltic Sea).

scientific article

Photoalteration of macrophyte-derived chromophoric dissolved organic matter induces growth of single bacterial populations in a coastal lagoon

Predation on prokaryotes in the water column and its ecological implications

scientific article

Priming of microbial microcystin degradation in biomass-fed gravity driven membrane filtration biofilms

scientific article published on 21 December 2017

Priming of microcystin degradation in carbon-amended membrane biofilm communities is promoted by oxygen-limited conditions

scientific article published on 01 November 2019

Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex.

scientific article published on 10 February 2009

Quantitative dominance of seasonally persistent filamentous cyanobacteria (Planktothrix rubescens) in the microbial assemblages of a temperate lake

article

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

scientific article published on 14 November 2011

Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms

scientific article published on 01 October 2007

Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters

scientific article published in November 2006

Scent of danger: floc formation by a freshwater bacterium is induced by supernatants from a predator-prey coculture

scientific article

Seasonal Community and Population Dynamics of Pelagic Bacteria and Archaea in a High Mountain Lake ⬇️

scientific article published on November 1, 1998

Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12) ⬇️

scientific article published on March 17, 2011

Seasonal dynamics and activity of typical freshwater bacteria in brackish waters of the Gulf of Gdańsk

article by Kasia Piwosz et al published May 2013 in Limnology and Oceanography

Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes

scientific article published on 30 June 2014

Seasonal population dynamics and trophic role of planktonic nanoflagellates in coastal surface waters of the Southern Baltic Sea.

scientific article

Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH.

scientific article published on 23 January 2007

Short-term displacement ofPlanktothrix rubescens(cyanobacteria) in a pre-alpine lake observed using an autonomous sampling platform

article

Simultaneous fluorescence in situ hybridization of mRNA and rRNA for the detection of gene expression in environmental microbes

scientific article published in January 2005

Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes

article by Marisa O D Silva et al published 2019 in Frontiers in Microbiology

Spatial microheterogeneity and selective microbial consumption of dissolved free amino acids in an oligomesotrophic lake

scientific article published in 2021

Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake

scientific article published in August 2008

Spatiotemporal distribution and activity patterns of bacteria from three phylogenetic groups in an oligomesotrophic lake

scientific article published in 2010

Suboptimal light conditions negatively affect the heterotrophy of Planktothrix rubescens but are beneficial for accompanying Limnohabitans spp

scientific article published on 09 November 2011

Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake

scientific article

The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche-driven microbial community assembly processes

scientific article published on 29 September 2020

The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign.

scientific article

The toxicity and enzyme activity of a chlorine and sulfate containing aeruginosin isolated from a non-microcystin-producing Planktothrix strain ⬇️

scientific article published on October 2014

Toxicity of microcystin-deficient Planktothrix strains due to chlorine and sulfate containing aeruginosins

article

Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach

scientific article

Vertical and longitudinal distribution patterns of different bacterioplankton populations in a canyon-shaped, deep prealpine lake

scientific article published on 19 September 2011

Winter bloom of a rare betaproteobacterium in the Arctic Ocean

scientific article

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