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List of works by Cavan S. Reilly

5-Azacytidine Enhances the Mutagenesis of HIV-1 by Reduction to 5-Aza-2'-Deoxycytidine.

scientific article published on February 2016

A Bayesian approach to the alignment of mass spectra

scientific article published on 09 October 2009

A Longitudinal Study of Ebola Sequelae in Liberia

scholarly article published 7 March 2019 in The New England Journal of Medicine

A Method for Determining Taxonomical Contributions to Group Differences in Microbiomic Investigations

scientific article published on 14 May 2015

A Neutralizing Monoclonal Antibody for Hospitalized Patients with Covid-19

scientific article published on 22 December 2020

A nonparametric approach to the analysis of longitudinal data via a set of level crossing problems with application to the analysis of microarray time course experiments

scientific article

A role for syndecan-1 and claudin-2 in microbial translocation during HIV-1 infection

scientific article

A semiparametric test to detect associations between quantitative traits and candidate genes in structured populations

scientific article published on 27 August 2008

Adult and paediatric haematology and clinical chemistry laboratory reference limits for Liberia

scientific article published on 25 November 2020

Age-related macular degeneration and retinal protein modification by 4-hydroxy-2-nonenal

scientific article

Alternative polyadenylation regulates CELF1/CUGBP1 target transcripts following T cell activation

scientific article published on 11 August 2014

Amount of lymphatic tissue fibrosis in HIV infection predicts magnitude of HAART-associated change in peripheral CD4 cell count

scientific article published on 01 December 2005

Antifibrotic therapy in simian immunodeficiency virus infection preserves CD4+ T-cell populations and improves immune reconstitution with antiretroviral therapy

scientific article

Apoptosis resistance downstream of eIF4E: posttranscriptional activation of an anti-apoptotic transcript carrying a consensus hairpin structure.

scientific article

Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression

scientific article published on April 2008

Assessment and Optimization of the GeneXpert Diagnostic Platform for Detection of Ebola Virus RNA in Seminal Fluid

scientific article published on 21 December 2016

Association tests for a censored quantitative trait and candidate genes in structured populations with multilevel genetic relatedness

scientific article published in September 2010

Biomarkers of inflammation in infants with cystic fibrosis

scientific article published on 8 January 2018

Blood biomarkers as surrogate endpoints of treatment responses to aerobic exercise and cognitive training (ACT) in amnestic mild cognitive impairment: the blood biomarkers study protocol of a randomized controlled trial (the ACT Trial)

scientific article published on 06 January 2020

CD4+CD25+Foxp3+ regulatory T cells optimize diversity of the conventional T cell repertoire during reconstitution from lymphopenia

scientific article published on 31 March 2010

Calprotectin (S100A8/A9) Is an Innate Immune Effector in Experimental Periodontitis

scientific article published on 07 June 2021

Characterization of Ebola Virus-Associated Eye Disease

scientific article published on 04 January 2021

Chronic obstructive pulmonary disease lung microbiota diversity may be mediated by age or inhaled corticosteroid use.

scientific article published in March 2015

Chronic obstructive pulmonary disease upper airway microbiome is associated with select clinical characteristics

scientific article published on 23 July 2019

Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study.

scientific article published on 7 June 2019

Collagen deposition in HIV-1 infected lymphatic tissues and T cell homeostasis

scientific article

Collagen deposition in HIV-1 infected lymphatic tissues and T cell homeostasis

article

Collagen deposition limits immune reconstitution in the gut

scientific article published on August 2008

Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1

scientific article published in February 2008

Coordinate stabilization of growth-regulatory transcripts in T cell malignancies

scientific article published on August 2005

Cumulative mechanisms of lymphoid tissue fibrosis and T cell depletion in HIV-1 and SIV infections

scientific article

Defining HIV and SIV Reservoirs in Lymphoid Tissues.

scientific article published on January 2016

Design and implementation of the multi-arm, multi-stage Therapeutics for Inpatients with COVID-19 (TICO) platform master protocol: An Accelerating COVID-19 Therapeutic Interventions and Vaccines (ACTIV) initiative

scientific article published on 12 November 2020

Determination of simian immunodeficiency virus production by infected activated and resting cells

scientific article published in January 2007

Early resolution of acute immune activation and induction of PD-1 in SIV-infected sooty mangabeys distinguishes nonpathogenic from pathogenic infection in rhesus macaques

scientific article published on May 2008

Ebola virus disease-related stigma among survivors declined in Liberia over an 18-month, post-outbreak period: An observational cohort study

scientific article published on 27 February 2019

Elevated peptides in lung lavage fluid associated with bronchiolitis obliterans syndrome

scientific article

Field Application of Digital Technologies for Health Assessment in the 10,000 Families Study

scientific article published on 04 March 2020

Gene expression alterations in brains of mice infected with three strains of scrapie

scientific article published on 16 May 2006

Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes

scientific article published in December 2002

Global assessment of cross-hybridization for oligonucleotide arrays.

scientific article published on April 2006

Glycerol Monolaurate Microbicide Protection against Repeat High-Dose SIV Vaginal Challenge.

scientific article

Glycerol monolaurate prevents mucosal SIV transmission

scientific article

HIV Care Trajectories as a Novel Longitudinal Assessment of Retention in Care

scientific article published on 01 September 2019

HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation

scientific article published on 10 July 2015

Host Genes Associated with HIV-1 Replication in Lymphatic Tissue ⬇️

scientific article published on October 8, 2010

Human immunodeficiency virus mutagenesis during antiviral therapy: impact of drug-resistant reverse transcriptase and nucleoside and nonnucleoside reverse transcriptase inhibitors on human immunodeficiency virus type 1 mutation frequencies

scientific article

Human neutrophil peptide in lung chronic allograft dysfunction ⬇️

scientific article published on October 11, 2011

Impact of Integrase Inhibition Compared With Nonnucleoside Inhibition on HIV Reservoirs in Lymphoid Tissues

scientific article published on 01 July 2019

Improved detection of differentially expressed genes through incorporation of gene locations

scientific article published on 23 January 2009

In vitro culture during retroviral transduction improves thymic repopulation and output after total body irradiation and autologous peripheral blood progenitor cell transplantation in rhesus macaques

scientific article published on 23 February 2006

Lack of mutational hot spots during decitabine-mediated HIV-1 mutagenesis

scientific article

Large number of rebounding/founder HIV variants emerge from multifocal infection in lymphatic tissues after treatment interruption

scientific article

Linkage analysis of a cluster-based quantitative phenotype constructed from pulmonary function test data in 27 multigenerational families with multiple asthmatic members

scientific article

Live simian immunodeficiency virus vaccine correlate of protection: immune complex-inhibitory Fc receptor interactions that reduce target cell availability

scientific article

Live simian immunodeficiency virus vaccine correlate of protection: local antibody production and concentration on the path of virus entry

scientific article

Location and dynamics of the immunodominant CD8 T cell response to SIVΔnef immunization and SIVmac251 vaginal challenge

scientific article (publication date: 2013)

Lymphatic tissue fibrosis is associated with reduced numbers of naive CD4+ T cells in human immunodeficiency virus type 1 infection.

scientific article

Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions

scientific article published on 24 October 2014

Lymphoid tissue damage in HIV-1 infection depletes naïve T cells and limits T cell reconstitution after antiretroviral therapy.

scientific article

Lymphoid tissue fibrosis is associated with impaired vaccine responses.

scientific article

Metabolite profiles associated with disease progression in influenza infection

scientific article published on 02 April 2021

Metabolomics analysis identifies novel plasma biomarkers of cystic fibrosis pulmonary exacerbation

scientific article published on 26 June 2015

Microarray analysis of lymphatic tissue reveals stage-specific, gene expression signatures in HIV-1 infection

scientific article published on 13 July 2009

Naive and memory CD4+ T cell survival controlled by clonal abundance

scientific article published on 02 March 2006

Natural polymorphisms in human APOBEC3H and HIV-1 Vif combine in primary T lymphocytes to affect viral G-to-A mutation levels and infectivity

scientific article

Peak SIV replication in resting memory CD4+ T cells depletes gut lamina propria CD4+ T cells

scientific article published in April 2005

Peptides in Bronchoalveolar Lavage in Chronic Obstructive Pulmonary Disease

scientific article

Persistent HIV-1 replication is associated with lower antiretroviral drug concentrations in lymphatic tissues

scientific article published on 27 January 2014

Persistent abnormalities in lymphoid tissues of human immunodeficiency virus-infected patients successfully treated with highly active antiretroviral therapy

scientific article

Plasma sphingolipids in HIV-associated chronic obstructive pulmonary disease

scientific article

Poor initial CD4+ recovery with antiretroviral therapy prolongs immune depletion and increases risk for AIDS and non-AIDS diseases

scientific article published on August 2008

Potential Impact of Integrating HIV Surveillance and Clinic Data on Retention-in-Care Estimates and Re-Engagement Efforts

scientific article

Potential roles of follicular dendritic cell-associated osteopontin in lymphoid follicle pathology and repair and in B cell regulation in HIV-1 and SIV infection

scientific article published on 25 August 2005

Premature induction of an immunosuppressive regulatory T cell response during acute simian immunodeficiency virus infection

scientific article

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

scientific article

Proteomics of the retinal pigment epithelium reveals altered protein expression at progressive stages of age-related macular degeneration

scientific article published in March 2006

Real-time imaging of anti-biofilm effects using CP-OCT.

scientific article

Reovirus induces and benefits from an integrated cellular stress response

scientific article published in February 2006

Roles of substrate availability and infection of resting and activated CD4+ T cells in transmission and acute simian immunodeficiency virus infection

scholarly article

Scalable, semi-automated fluorescence reduction neutralization assay for qualitative assessment of Ebola virus-neutralizing antibodies in human clinical samples

scientific article published on 27 August 2019

Simian immunodeficiency virus-induced intestinal cell apoptosis is the underlying mechanism of the regenerative enteropathy of early infection

scientific article published in February 2008

Simian immunodeficiency virus-induced lymphatic tissue fibrosis is mediated by transforming growth factor beta 1-positive regulatory T cells and begins in early infection

scientific article published on 8 January 2007

Sputum club cell protein concentration is associated with pulmonary exacerbation in cystic fibrosis

scientific article published on 23 October 2014

Synergistic reduction of HIV-1 infectivity by 5-azacytidine and inhibitors of ribonucleotide reductase.

scientific article published on 30 March 2016

The Immunosuppressive Role of IL-32 in Lymphatic Tissue during HIV-1 Infection ⬇️

scientific article published on April 27, 2011

The Lung Microbiome in Moderate and Severe Chronic Obstructive Pulmonary Disease ⬇️

scientific article published on October 11, 2012

The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease

scientific article

The proteome of central and peripheral retina with progression of age-related macular degeneration.

scientific article published in June 2006

Transformation of the proteasome with age-related macular degeneration

scientific article published on 2 February 2007

Treatment of Prion Disease with Heterologous Prion Proteins

scientific article

Tristetraprolin recruits functional mRNA decay complexes to ARE sequences

scientific article published in April 2007

Tryptophan catabolism in acute exacerbations of chronic obstructive pulmonary disease.

scientific article published on 29 September 2016

Use of the Filovirus Animal Non-Clinical Group (FANG) Ebola virus immuno-assay requires fewer study participants to power a study than the Alpha Diagnostic International assay

scientific article published on 23 February 2018

Using image and curve registration for measuring the goodness of fit of spatial and temporal predictions

scientific article published in December 2004

Visualizing antigen-specific and infected cells in situ predicts outcomes in early viral infection

scientific article

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