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List of works by Duy Thanh Pham

A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation

scientific article

A genomic snapshot of Salmonella enterica serovar Typhi in Colombia

scientific article published on 16 September 2021

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

scientific article published on 20 February 2015

A multi-center randomized trial to assess the efficacy of gatifloxacin versus ciprofloxacin for the treatment of shigellosis in Vietnamese children

scientific article

A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure

scientific article published on 11 March 2016

A prospective multi-center observational study of children hospitalized with diarrhea in Ho Chi Minh City, Vietnam

scientific article published on 23 March 2015

A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection

scientific article

An evaluation of purified Salmonella Typhi protein antigens for the serological diagnosis of acute typhoid fever

scientific article published on 24 May 2017

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii

scientific article published in 2019

Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A

scientific article

Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission

scientific article published in October 2011

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

scientific article published on 23 October 2019

Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid

scientific article published in July 2011

Erratum for Parry et al., Clinically and microbiologically derived azithromycin susceptibility breakpoints for Salmonella enterica serovars Typhi and Paratyphi A.

scientific article published on July 2015

Evaluation of the Clinical and Microbiological Response to Salmonella Paratyphi A Infection in the First Paratyphoid Human Challenge Model

scientific article

Evaluation of the diagnostic accuracy of a typhoid IgM flow assay for the diagnosis of typhoid fever in Cambodian children using a Bayesian latent class model assuming an imperfect gold standard

scientific article

Fitness benefits in fluoroquinolone-resistant Salmonella Typhi in the absence of antimicrobial pressure

scientific article published on 10 December 2013

Gallbladder carriage generates genetic variation and genome degradation in Salmonella Typhi

scientific article published on 21 October 2020

Gatifloxacin versus ceftriaxone for uncomplicated enteric fever in Nepal: an open-label, two-centre, randomised controlled trial

scientific article published on 19 January 2016

Genomic insights into the circulation of pandemic fluoroquinolone-resistant extra-intestinal pathogenic Escherichia coli ST1193 in Vietnam

scientific article published in 2021

Highly resistant Salmonella enterica serovar Typhi with a novel gyrA mutation raises questions about the long-term efficacy of older fluoroquinolones for treating typhoid fever

scientific article published on 27 February 2012

Identification of Salmonella enterica serovar Typhi genotypes by use of rapid multiplex ligation-dependent probe amplification

scientific article (publication date: September 2013)

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

scientific article published on 30 May 2016

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

scientific article published on 27 April 2015

Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan

scientific article published on 24 December 2015

New Variant of Multidrug-Resistant Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam

scholarly article by Alison E Mather et al published 4 September 2018 in mBio

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

scientific article published on 11 May 2015

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

scientific article

South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study

scientific article

Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

scientific article published on 4 August 2015

Suitable disk antimicrobial susceptibility breakpoints defining Salmonella enterica serovar Typhi isolates with reduced susceptibility to fluoroquinolones

scientific article

Temporal fluctuation of multidrug resistant salmonella typhi haplotypes in the mekong river delta region of Vietnam

scientific article published on 4 January 2011

The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water

scientific article

The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia

scientific article

The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery

scientific article

The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu

scientific article published on 15 November 2010

The characterization of ESBL genes in Escherichia coli and Klebsiella pneumoniae causing nosocomial infections in Vietnam

scientific article published on 15 December 2013

The genomic signatures of Shigella evolution, adaptation and geographical spread

scientific article published on 29 February 2016

The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal

scientific article

Tracking the establishment of local endemic populations of an emergent enteric pathogen

scientific article published on 30 September 2013

Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program

scientific article

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

scientific article published on 22 March 2013

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