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List of works by Karin Rodland

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

scientific article

A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum

scientific article

A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

scientific article

A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

A review of imputation strategies for isobaric labeling-based shotgun proteomics

scientific article published on 15 September 2020

A semiautomated framework for integrating expert knowledge into disease marker identification

scientific article published on 10 October 2013

Activation of the MAP kinase cascade by exogenous calcium-sensing receptor

scientific article published in February 2003

Advances in targeted proteomics and applications to biomedical research

scientific article

An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation

scientific article published on 21 June 2019

An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics

scientific article

An improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) strategy for precise quantitative single-cell proteomics

scientific article published on 03 March 2020

Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests

scientific article

Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions

scientific article published on 8 May 2006

Analytical platform evaluation for quantification of ERG in prostate cancer using protein and mRNA detection methods

scientific article

Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

scientific article

Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer.

scientific article

As if biomarker discovery isn't hard enough: the consequences of poorly characterized reagents

scientific article

Automated Annotation-Based Bio-Ontology Alignment with Structural Validation

scientific article published on 30 July 2009

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements

scientific article published on 16 August 2014

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

scientific article

Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells.

scientific article

Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells

scientific article published on 28 December 2018

Cellular mechanisms of TGF-beta action

scientific article published on June 1990

Challenges in Biomarker Discovery: Combining Expert Insights with Statistical Analysis of Complex Omics Data.

scientific article

Characterization of a unique enhancer element responsive to cyclic adenosine 3',5'-monophosphate and elevated calcium

scientific article

Characterization of plasma membrane proteins from ovarian cancer cells using mass spectrometry

scientific article published on January 2003

Characterization of the Ovarian Tumor Peptidome

scientific article published on 22 February 2018

Clinical potential of mass spectrometry-based proteogenomics

Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes.

scientific article

Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway

scientific article published on 12 July 2016

Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

scientific article published on 01 August 2020

Cross-talk between the calcium-sensing receptor and the epidermal growth factor receptor in Rat-1 fibroblasts

scientific journal article

Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues.

scientific article published on 20 July 2017

Detection of head and neck cancer based on longitudinal changes in serum protein abundance

scientific article published on 12 June 2020

Developing recombinant antibodies for biomarker detection ⬇️

scientific article published on January 1, 2010

Disruption of intracellular processing of epidermal growth factor by methylamine inhibits epidermal growth factor-induced DNA synthesis but not early morphological or transcriptional events.

scientific article

Estrogen inhibits cell cycle progression and retinoblastoma phosphorylation in rhesus ovarian surface epithelial cell culture

scientific article published on October 2003

Evaluation of Differential Peptide Loading on Tandem Mass Tag-Based Proteomic and Phosphoproteomic Data Quality

scientific article published on 23 November 2021

Evaluation of surface chemistries for antibody microarrays

scientific article

Expediting SRM assay development for large-scale targeted proteomics experiments

scientific article

Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells

scientific article published on 05 August 2021

Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells

scientific article published on 06 August 2018

Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes

scientific article published on January 2002

Glomerular filtrate proteins in acute cardiorenal syndrome

High-dose estrogen and clinical selective estrogen receptor modulators induce growth arrest, p21, and p53 in primate ovarian surface epithelial cells

scientific article

Identification of Proteins in Human Cytomegalovirus (HCMV) Particles: the HCMV Proteome

scientific article published in December 2004

Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome

scientific article published on October 2004

Immobilization strategies for single-chain antibody microarrays

scientific article published on 01 June 2008

Inhibition of interleukin-1 receptor-associated kinase-1 is a therapeutic strategy for acute myeloid leukemia subtypes.

scientific article

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

scientific article published on 28 June 2016

Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma

scientific article published on 01 October 2020

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

scientific article

Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis.

scientific article published on 19 September 2013

Mass spectrometry and biomarker development

scientific article published on January 2004

Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy

scientific article published on 11 October 2018

Modulation of RNA expression by intracellular calcium. Existence of a threshold calcium concentration for induction of VL30 RNA by epidermal growth factor, endothelin, and protein kinase C.

scientific article published on July 1990

Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics

Multiple mechanisms are responsible for transactivation of the epidermal growth factor receptor in mammary epithelial cells.

scientific article

Multiplexed targeted mass spectrometry assays for prostate cancer-associated urinary proteins

scientific article published on 9 October 2017

NFAT regulates calcium-sensing receptor-mediated TNF production

scientific article

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data

scientific article published on 06 February 2019

P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets ⬇️

scientific article published in November 2017

Phosphatidylinositol 3-kinase-dependent, MEK- independent proliferation in response to CaR activation

scientific article

Polysialylated N-glycans identified in human serum through combined developments in sample preparation, separations, and electrospray ionization-mass spectrometry.

scientific article

Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia that Is Associated with Neuroprotection

scientific article published on 19 October 2018

Proliferation of rhesus ovarian surface epithelial cells in culture: lack of mitogenic response to steroid or gonadotropic hormones

scientific article

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

scientific article published on 25 April 2019

Proteogenomic Characterization of Endometrial Carcinoma

scientific article published on 13 February 2020

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

scientific article published on 10 April 2020

Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data

scientific article

Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction

scientific article

Proteomic Analysis of Exosomes for Discovery of Protein Biomarkers for Prostate and Bladder Cancer

scientific article published on 19 August 2020

Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression

scientific article published on 17 May 2020

Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages

scientific article published on 7 August 2006

Proteomic approaches for site-specific O-GlcNAcylation analysis

scientific article

Proteomics and cancer diagnosis: the potential of mass spectrometry

scientific article

Proteomics of ovarian cancer: functional insights and clinical applications

scientific article

Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.

scientific article published on 10 November 2017

Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics

scientific article published on 15 August 2017

Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease

scientific article published on 28 June 2017

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays

scientific article published on January 2016

Reducing heterophilic antibody interference in immunoassays using single-chain antibodies ⬇️

scientific article published on August 30, 2011

Regulation of Intracellular Ca2+ and Gene Expression by Endothelin-1 ⬇️

scientific article published on January 1, 1991

Regulation of VL30 gene expression by activators of protein kinase C.

scientific article published on April 1986

Regulation of transin/stromelysin and VL30 gene expression by intracellular calcium

scientific article published on June 1, 1992

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

scientific article published on 14 December 2015

Residual tissue repositories as a resource for population-based cancer proteomic studies

scientific article published on 03 August 2018

Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

scientific article published on 22 April 2015

Role of CTGF in Sensitivity to Hyperthermia in Ovarian and Uterine Cancers.

scientific article

Searching for a system: the quest for ovarian cancer biomarkers

scientific article published on November 3, 2011

Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment

scientific article

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies

scientific article

Stimulation of Ca2+ influx by endothelin-1 is subject to negative feedback by elevated intracellular Ca2+.

scientific article published on June 1991

Stimulation of phosphatidylinositol hydrolysis, diacylglycerol release, and gene expression in response to endothelin, a potent new agonist for fibroblasts and smooth muscle cells

scientific article

Surface chemistries for antibody microarrays

scientific article published on May 2007

Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics

scientific article published on 01 March 2021

Systems biology and biomarker discovery

scientific article published on January 2010

Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer

scientific article published on 19 July 2017

Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion

scientific article published on 13 June 2013

The clinical impact of recent advances in LC-MS for cancer biomarker discovery and verification

scientific article published on 18 November 2015

The role of the calcium-sensing receptor in cancer

scientific article published on March 2004

Transforming growth factor beta and epidermal growth factor alter calcium influx and phosphatidylinositol turnover in rat-1 fibroblasts

scientific article published on December 1988

Transforming growth factor beta modulates epidermal growth factor-induced phosphoinositide metabolism and intracellular calcium levels

scientific article published in April 1988

Transient inhibition of protein synthesis induces the immediate early gene VL30: alternative mechanism for thapsigargin-induced gene expression

scientific article published on 01 July 1995

Two tumor promoters, 12-O-tetradecanoylphorbol-13-acetate and thapsigargin, act synergistically via distinct signaling pathways to stimulate gene expression.

scientific article published on December 1990

Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella

scientific article published on December 2008

Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays

scientific article published on January 2016

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