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List of works by Elzbieta Kierzek

A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation

scientific article published on 21 October 2015

A Short Chemically Modified dsRNA-Binding PNA (dbPNA) Inhibits Influenza Viral Replication by Targeting Viral RNA Panhandle Structure

scientific article published on 15 February 2019

A Tandem Oligonucleotide Approach for SNP-Selective RNA Degradation Using Modified Antisense Oligonucleotides

scientific article published on 6 November 2015

A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2'-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes

scientific article published on 12 June 2007

A conformationally restricted guanosine analog reveals the catalytic relevance of three structures of an RNA enzyme.

scientific article published in January 2007

Antisense Oligonucleotides Targeting Influenza A Segment 8 Genomic RNA Inhibit Viral Replication

scientific article published on 27 July 2016

Binding of short oligonucleotides to RNA: studies of the binding of common RNA structural motifs to isoenergetic microarrays

scientific article published on December 2009

Chemical synthesis of LNA-2-thiouridine and its influence on stability and selectivity of oligonucleotide binding to RNA.

scientific article

Comparisons between chemical mapping and binding to isoenergetic oligonucleotide microarrays reveal unexpected patterns of binding to the Bacillus subtilis RNase P RNA specificity domain

scientific article published on September 2010

Conscious uncoupling of riboswitch functions

scientific article published on 28 February 2020

Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids

scientific article

Correction: A Tandem Oligonucleotide Approach for SNP-Selective RNA Degradation Using Modified Antisense Oligonucleotides

scientific article published on 19 September 2016

Correction: The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin.

scientific article published on 18 September 2012

Exploring the energy landscape of a small RNA hairpin

scientific article published on 01 February 2006

Facilitating RNA structure prediction with microarrays

scientific article

Folding thermodynamics and kinetics of YNMG RNA hairpins: specific incorporation of 8-bromoguanosine leads to stabilization by enhancement of the folding rate

scientific article

Influenza virus segment 5 (+)RNA - secondary structure and new targets for antiviral strategies

scientific article published on 8 November 2017

Interplay of LNA and 2'-O-methyl RNA in the structure and thermodynamics of RNA hybrid systems: a molecular dynamics study using the revised AMBER force field and comparison with experimental results

scientific article published on 30 September 2014

Isoenergetic microarray mapping reveals differences in structure between tRNAiMet and tRNAmMet from Lupinus luteus

scientific article

Isoenergetic microarray mapping--the advantages of this method in studying the structure of Saccharomyces cerevisiae tRNAPhe

scientific article

Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes

scientific article published on 15 August 2011

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function

scientific article

LNA-modified primers drastically improve hybridization to target RNA and reverse transcription.

scientific article

Microarrays for identifying binding sites and probing structure of RNAs

scientific article

Modified RNA triplexes: Thermodynamics, structure and biological potential

scientific article published in Scientific Reports

Nearest neighbor parameters for Watson-Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA oligonucleotides

scientific article published on 26 July 2006

Organization of the Influenza A Virus Genomic RNA in the Viral Replication Cycle-Structure, Interactions, and Implications for the Emergence of New Strains

scientific article published on 15 November 2020

RNA Secondary Structure Motifs of the Influenza A Virus as Targets for siRNA-Mediated RNA Interference

scientific article published on 24 December 2019

RNA Secondary Structure as a First Step for Rational Design of the Oligonucleotides towards Inhibition of Influenza A Virus Replication

scientific article published on 07 November 2020

Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides

scientific article

Restricting the conformational heterogeneity of RNA by specific incorporation of 8-bromoguanosine

scientific article published in March 2003

Secondary structure model of the naked segment 7 influenza A virus genomic RNA.

scientific article published on 30 September 2016

Secondary structure of a conserved domain in an intron of influenza A M1 mRNA

scientific article

Secondary structure of a conserved domain in the intron of influenza A NS1 mRNA

scientific article (publication date: 2013)

Secondary structure of the segment 5 genomic RNA of influenza A virus and its application for designing antisense oligonucleotides

scientific article published on 07 March 2019

Secondary structure prediction for RNA sequences including N<sup>6</sup>-methyladenosine

scientific article published on 11 March 2022

Secondary structures for 5' regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints

scientific article

Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus

scientific article

Structural Aspects of the Antiparallel and Parallel Duplexes Formed by DNA, 2'-O-Methyl RNA and RNA Oligonucleotides

scientific article published on 18 November 2015

Structural determinants for alternative splicing regulation of the MAPT pre-mRNA

scientific article

Structural diversity of triplet repeat RNAs

scientific article published on 16 February 2010

Structural variants and modifications of hammerhead ribozymes targeting influenza A virus conserved structural motifs

scientific article published on 31 May 2022

Studying the influence of stem composition in pH-sensitive molecular beacons onto their sensing properties

scientific article published on 21 July 2017

Synthesis of oligoribonucleotides containing N6-alkyladenosine and 2-methylthio-N6-alkyladenosine

scientific article published on September 2004

TMV mutants with poly(A) tracts of different lengths demonstrate structural variations in 3'UTR affecting viral RNAs accumulation and symptom expression

scientific article

The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin ⬇️

scientific article published on June 7, 2012

The contribution of pseudouridine to stabilities and structure of RNAs

scientific article published on 24 December 2013

The influence of locked nucleic acid residues on the thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes

scientific article

The spontaneous rearrangement of 2,4-dinitrophenyl substituent in ribonucleosides under neutral conditions

scientific article published on September 2010

The synthesis of oligoribonucleotides containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines via post-synthetic modification of precursor oligomers

scientific article

The thermodynamic stability of RNA duplexes and hairpins containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines

scientific article

The thermodynamics of 3'-terminal pyrene and guanosine for the design of isoenergetic 2'-O-methyl-RNA-LNA chimeric oligonucleotide probes of RNA structure

scientific article published on 5 January 2008

Thermodynamic Stability of RNA Structures Formed by CNG Trinucleotide Repeats. Implication for Prediction of RNA Structure†

scientific article published in August 2005

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