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List of works by Alexander Schmidt

A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

scientific article published on 05 June 2015

A bacterial type III secretion-based protein delivery tool for broad applications in cell biology

scientific article

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

scientific article

A mass spectrometric-derived cell surface protein atlas

scientific article

A novel capture compound for the identification and analysis of cyclic di-GMP binding proteins.

scientific article published on 29 May 2012

A rare codon-based translational program of cell proliferation

scientific article published on 27 February 2020

ATM-Dependent and -Independent Dynamics of the Nuclear Phosphoproteome After DNA Damage ⬇️

scientific article published on December 7, 2010

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

scientific article

Abundance of bacterial Type VI secretion system components measured by targeted proteomics.

scientific article published on 13 June 2019

Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins

scientific article

An experimental strategy for the identification of AMPylation targets from complex protein samples

scientific article published on 20 March 2014

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures

scientific article published on 29 May 2008

Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry

scientific article

Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites

scientific article

Bace2 is a β cell-enriched protease that regulates pancreatic β cell function and mass

scientific article published on September 2011

Bacterial persistence is an active σS stress response to metabolic flux limitation.

scientific article published on 21 September 2016

Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity

scientific article published on 12 May 2022

CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis

scientific article published on 01 April 2022

Capture compound mass spectrometry--a powerful tool to identify novel c-di-GMP effector proteins

scientific article

Centriolar distal appendages activate the centrosome-PIDDosome-p53 signalling axis via ANKRD26

scientific article published on 22 December 2020

Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells

scientific article

Comprehensive Description of the N-Glycoproteome of Mouse Pancreatic β-Cells and Human Islets ⬇️

scientific article published on January 27, 2012

Correction to "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells".

scientific article published on 19 January 2016

Critical assessment of proteome-wide label-free absolute abundance estimation strategies

scientific article published on 30 July 2013

Cryo-EM structure of native human thyroglobulin

scientific article published on 10 January 2022

Deuterium induces a distinctive proteome that correlates with the reduction in growth rate

scientific article published on 13 December 2018

Differential Plasma Glycoproteome of p19 Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform

scientific article

Differential scaling between G1 protein production and cell size dynamics promotes commitment to the cell division cycle in budding yeast

scientific article published on 04 November 2019

Directed mass spectrometry: towards hypothesis-driven proteomics

scientific article published on 21 September 2009

Disparate impact of oxidative host defenses determines the fate of Salmonella during systemic infection in mice

scientific article published in January 2014

Dual input control: activation of the Bartonella henselae VirB/D4 type IV secretion system by the stringent sigma factor RpoH1 and the BatR/BatS two-component system

scientific article published on 4 October 2013

Endogenous morphine levels are increased in sepsis: a partial implication of neutrophils

scientific article

Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry ⬇️

scientific article published on November 20, 2011

Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments

scientific article published on 27 June 2016

Evaluation of data-dependent and -independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites

scientific article

Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter

scientific article published on 23 February 2022

Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry.

scientific article published on 4 May 2015

Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas

scientific article

Functioning of a metabolic flux sensor in Escherichia coli.

scientific article published on 31 December 2012

Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells

scientific article

Global Ion Suppression Limits the Potential of Mass Spectrometry Based Phosphoproteomics

scientific article published on 12 November 2018

Glucagon-induced acetylation of Foxa2 regulates hepatic lipid metabolism

scientific article published on 14 February 2013

High-accuracy proteome maps of human body fluids

scientific article published on January 2006

High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq

scientific article published on 27 December 2016

IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics

scientific article published on 21 June 2011

Identification of cross-linked peptides from large sequence databases

scientific article published on 09 March 2008

Immunity to Intracellular Salmonella Depends on Surface-associated Antigens ⬇️

scientific article published on October 18, 2012

Integrative proteogenomic characterization of hepatocellular carcinoma across etiologies and stages

scientific article published on 04 May 2022

Interactome and F-Actin Interaction Analysis of Dictyostelium discoideum Coronin A

scientific article published on 21 February 2020

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

Mass spectrometry analysis of circulating breast cancer cells from a Xenograft mouse model

scientific article published on 17 April 2021

Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor

scientific article published on 01 December 2019

Mind Bomb Regulates Cell Death during TNF Signaling by Suppressing RIPK1's Cytotoxic Potential

scientific article published in April 2018

Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome

scientific article published on 8 November 2011

Mutations in respiratory complex I promote antibiotic persistence through alterations in intracellular acidity and protein synthesis

scientific article published on 27 January 2022

Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast

scientific article

Parallel exploitation of diverse host nutrients enhances Salmonella virulence.

scientific article

Phenotypic variation of Salmonella in host tissues delays eradication by antimicrobial chemotherapy.

scientific article published on August 2014

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

scientific article

Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation

scientific article published on 19 August 2020

Protein biogenesis machinery is a driver of replicative aging in yeast ⬇️

scientific article

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

scientific article

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

scientific article published on 10 July 2019

Proteome organization in a genome-reduced bacterium

scientific journal article

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

scientific article published on 15 July 2009

Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells.

scientific article published on 22 June 2010

Proteomics of Pyrococcus furiosus (Pfu): Identification of Extracted Proteins by Three Independent Methods

scientific article published on 18 January 2013

Protocol for high-yield production of photo-leucine-labeled proteins in Escherichia coli

scientific article published on 15 May 2020

Quantification of mRNA and protein and integration with protein turnover in a bacterium

scientific article published on 19 July 2011

Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

scientific article (publication date: 26 October 2012)

Quantitative analysis of human centrosome architecture by targeted proteomics and fluorescence imaging.

scientific article published on 18 August 2016

Quantitative interaction proteomics using mass spectrometry

scientific article

Quantitative isoform-profiling of highly diversified recognition molecules.

scientific article published on 18 May 2015

Quantitative proteomic and phosphoproteomic comparison of human colon cancer DLD-1 cells differing in ploidy and chromosome stability

scientific article published in March 2018

Quorum sensing governs a transmissive Legionella subpopulation at the pathogen vacuole periphery

scientific article published on 27 July 2021

Quorum sensing modulates the formation of virulent Legionella persisters within infected cells

scientific article published on 18 November 2019

RIPK1 and Caspase-8 Ensure Chromosome Stability Independently of Their Role in Cell Death and Inflammation

scientific article published on 28 December 2018

Regulation of α-synuclein by chaperones in mammalian cells

scientific article published on 04 December 2019

S6K1-mediated disassembly of mitochondrial URI/PP1gamma complexes activates a negative feedback program that counters S6K1 survival signaling

scientific article

SDHA gain-of-function engages inflammatory mitochondrial retrograde signaling via KEAP1-Nrf2

scientific article published on 16 September 2019

Secreted Matrix Metalloproteinase-9 of Proliferating Smooth Muscle Cells as a Trigger for Drug Release from Stent Surface Polymers in Coronary Arteries

scientific article published on 30 May 2016

Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC).

scientific article published on 23 January 2018

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes

scientific article

Stochastic Protein Alkylation by Antimalarial Peroxides

scientific article published on 02 December 2019

Stress induces remodelling of yeast interaction and co-expression networks

scientific article published on 7 March 2013

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

scientific article published on October 2007

Systematic proteomic analysis identifies β-site amyloid precursor protein cleaving enzyme 2 and 1 (BACE2 and BACE1) substrates in pancreatic β-cells

scientific article published on 19 February 2013

Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics.

scientific article published on 04 July 2013

The Gcn4 transcription factor reduces protein synthesis capacity and extends yeast lifespan

scientific article published on 6 September 2017

The Plk1-dependent phosphoproteome of the early mitotic spindle

scientific article

The SKP1-Cullin-F-box E3 ligase βTrCP and CDK2 cooperate to control STIL abundance and centriole number

scientific article published in February 2018

The protein tyrosine phosphatase <scp>PPH</scp>‐7 is required for fertility and embryonic development in <i>C. elegans</i> at elevated temperatures

scientific article published in 2024

The quantitative and condition-dependent Escherichia coli proteome

scientific article published on 07 December 2015

The quantitative proteome of a human cell line.

scientific article

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

scientific article

Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

scientific article

Visual proteomics of the human pathogen Leptospira interrogans

scientific article

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