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List of works by Susan Lynch

108 The Relationship of Pets, Vitamin D and IGE Concentrations to Upper Respiratory Infections in the First Year of Life.

scientific article

110 Is Pet Ownership Associated with Higher Vitamin D?

scientific article published on 17 February 2012

2296: Functional analysis of the cutaneous microbiome in psoriatic disease

scientific article published in September 2017

A chronic rhinosinusitis-derived isolate of Pseudomonas aeruginosa induces acute and pervasive effects on the murine upper airway microbiome and host immune response

scientific article published on 6 September 2016

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

scientific article

A20 in dendritic cells restrains intestinal anti-bacterial peptide expression and preserves commensal homeostasis

scientific article published on 11 July 2019

Airway Microbiota and the Implications of Dysbiosis in Asthma

scientific article

Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease.

scientific article

Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

scientific article

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

scientific article

Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

scientific article published in 2018

Alveolar hemostasis in patients with species-specific bacterial-mediated ventilator-associated pneumonia

scientific article published on 01 February 2007

Amelioration of DSS-induced murine colitis by VSL#3 supplementation is primarily associated with changes in ileal microbiota composition

scientific article published in July 2014

Association between cesarean delivery types and obesity in preadolescence

scientific article published on 01 September 2020

Associations between the gut microbiota and host immune markers in pediatric multiple sclerosis and controls

scientific article

Author Correction: Differences in the fecal microbiota of neonates born at home or in the hospital

scientific article published on 18 June 2019

Author Correction: Elevated faecal 12,13-diHOME concentration in neonates at high risk for asthma is produced by gut bacteria and impedes immune tolerance

scientific article published on 01 November 2019

Bacterial biogeography of adult airways in atopic asthma.

scientific article

Breast Milk Transforming Growth Factor β Is Associated With Neonatal Gut Microbial Composition

scientific article

Breast-fed and bottle-fed infant rhesus macaques develop distinct gut microbiotas and immune systems

scientific article

Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy

scientific article published on 25 August 2020

Characterizing the gut microbiome in trauma: significant changes in microbial diversity occur early after severe injury

scientific article published on 23 October 2017

ChrR, a soluble quinone reductase of Pseudomonas putida that defends against H2O2.

scientific article

Community ecology as a framework for human microbiome research

scientific article published on 27 May 2019

Comparative analyses of the bacterial microbiota of the human nostril and oropharynx.

scientific article

Comparison of the respiratory microbiome in healthy nonsmokers and smokers

scientific article published on May 2013

Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

scientific article published on 12 May 2017

Current understanding of the human microbiome.

scientific article published in April 2018

Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota

scientific article

Delayed gut microbiota development in high-risk for asthma infants is temporarily modifiable by Lactobacillus supplementation

scientific article published on 16 February 2018

Development of a standardized approach for environmental microbiota investigations related to asthma development in children

scientific article

Differences in the fecal microbiota of neonates born at home or in the hospital

scientific article published in Scientific Reports

Disease Severity and Immune Activity Relate to Distinct Interkingdom Gut Microbiome States in Ethnically Distinct Ulcerative Colitis Patients

scientific article

Distinct associations of sputum and oral microbiota with atopic, immunologic, and clinical features in mild asthma

scientific article published on 13 April 2020

Distinct lung microbiota associate with HIV-associated chronic lung disease in children

scientific article published on 30 September 2020

Distinct nasal airway bacterial microbiotas differentially relate to exacerbation in pediatric patients with asthma

scientific article published on 13 June 2019

Does pet-keeping modify the association of delivery mode with offspring body size?

scientific article published on June 2015

Dynamics of bacterial colonization with Streptococcus pneumoniae, Haemophilus influenzae and Moraxella catarrhalis during symptomatic and asymptomatic viral upper respiratory infection

scientific article published on 7 November 2017

Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism

scientific article

Early Probiotic Supplementation for Eczema and Asthma Prevention: A Randomized Controlled Trial

scientific article published on 7 August 2017

Early-life home environment and risk of asthma among inner-city children

scientific article published on 12 September 2017

Effect of prenatal indoor pet exposure on the trajectory of total IgE levels in early childhood ⬇️

scientific article published on August 5, 2011

Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children

scientific article

Elevated faecal 12,13-diHOME concentration in neonates at high risk for asthma is produced by gut bacteria and impedes immune tolerance

scientific article published on 22 July 2019

Enteric Virome and Bacterial Microbiota in Children with Ulcerative Colitis and Crohn's Disease

scientific article published on 01 January 2019

Expression quantitative trait locus fine mapping of the 17q12-21 asthma locus in African American children: a genetic association and gene expression study

scientific article published on 01 May 2020

Features of the bronchial bacterial microbiome associated with atopy, asthma, and responsiveness to inhaled corticosteroid treatment

scientific article published on 9 November 2016

Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study

scientific article published on 13 July 2019

Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile

scientific article published on 20 April 2019

Fetal and early postnatal lead exposure measured in teeth associates with infant gut microbiota

scientific article published on 29 August 2020

From Microbe to Microbiota: Considering Microbial Community Composition in Infections and Airway Diseases ⬇️

scientific article published on 01 April 2012

Future directions in early cystic fibrosis lung disease research: an NHLBI workshop report

scientific article

Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome.

scientific article

Genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays

scientific article published on 8 September 2009

Guide to designing, conducting, publishing and communicating results of clinical studies involving probiotic applications in human participants

scientific article

Gut microbiota composition and relapse risk in pediatric MS: A pilot study

scientific article

Gut microbiota in HIV-pneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction

article

Gut microbiota in early pediatric multiple sclerosis: a case-control study

scientific article

Gut-Resident Lactobacillus Abundance Associates with IDO1 Inhibition and Th17 Dynamics in SIV-Infected Macaques

scientific article published on 11 November 2015

Heterogeneity of Microbiota Dysbiosis in Chronic Rhinosinusitis: Potential Clinical Implications and Microbial Community Mechanisms Contributing to Sinonasal Inflammation.

scientific article published on 23 May 2018

House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection

scientific article

Immune Response and Mortality Risk Relate to Distinct Lung Microbiomes in Patients with HIV and Pneumonia

scientific article published on 22 July 2016

Increased mortality of ventilated patients with endotracheal Pseudomonas aeruginosa without clinical signs of infection

scientific article published in September 2008

Increased plasminogen activator inhibitor-1 concentrations in bronchoalveolar lavage fluids are associated with increased mortality in a cohort of patients with Pseudomonas aeruginosa

scientific article published in February 2007

Induction of intestinal Th17 cells by segmented filamentous bacteria

scientific article (publication date: 30 October 2009)

Joint effects of pregnancy, sociocultural, and environmental factors on early life gut microbiome structure and diversity

scientific article

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

scientific article

Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.

scientific article published on 25 May 2017

Longitudinal Phenotypes of Respiratory Health in a High-Risk Urban Birth Cohort

scientific article published on 01 January 2019

Lung Microbiota is Related to Smoking Status and to Development of ARDS in Critically Ill Trauma Patients.

scientific article published on 16 October 2017

Man's best friend? The effect of pet ownership on house dust microbial communities

scientific article

Maternal and cord blood vitamin D level and the infant gut microbiota in a birth cohort study

scientific article published on 20 October 2020

Maternal gut microbiome regulates immunity to RSV infection in offspring

scientific article published on 06 October 2021

Matrix metalloproteases in bronchoalveolar lavage fluid of patients with type III Pseudomonas aeruginosa pneumonia

scientific article published on 23 May 2009

Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012.

scientific article

Microbial manipulation of immune function for asthma prevention: inferences from clinical trials

scientific article published on July 2007

Microbiota in allergy and asthma and the emerging relationship with the gut microbiome

scientific article published on May 2015

Motility and biofilm formation of the emerging gastrointestinal pathogen Campylobacter concisus differs under microaerophilic and anaerobic environments

scientific article published on 25 September 2018

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

scientific article published on 6 August 2015

Nasopharyngeal microbiota composition of children is related to the frequency of upper respiratory infection and acute sinusitis

scientific article published on July 2016

Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation.

scientific article published on 12 September 2016

New enzyme for reductive cancer chemotherapy, YieF, and its improvement by directed evolution

scientific article published in January 2006

Nucleic acid extraction efficiency and bacterial recovery from maxillary sinus mucosal samples obtained by brushing or biopsy.

scientific article

Oral and airway microbiota in HIV-infected pneumonia patients

scientific article

Persistent infection with Pseudomonas aeruginosa in ventilator-associated pneumonia

scientific article published on 8 May 2008

Polymorphisms in the Pseudomonas aeruginosa type III secretion protein, PcrV - implications for anti-PcrV immunotherapy

scientific article

Probiotic manipulation of the gastrointestinal microbiota ⬇️

scientific article published on July 27, 2010

Promotion of Epithelial Barrier Integrity Via Probiotic-derived Products.

scientific article published on 28 July 2016

Pseudomonas aeruginosa biofilm-associated homoserine lactone C12 rapidly activates apoptosis in airway epithelia ⬇️

scientific article published on February 9, 2012

Race-specific Association of Caesarean-Section Delivery with Body Size at Age 2 Years

scientific article published on 21 January 2016

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa

scientific article published on 23 February 2010

Role of integrin alphav beta6 in acute lung injury induced by Pseudomonas aeruginosa

scientific article published on 31 March 2008

Role of small GTPases and alphavbeta5 integrin in Pseudomonas aeruginosa-induced increase in lung endothelial permeability

scientific article

Role of the gut microbiota in defining human health

scientific article

Role of the lung microbiome in HIV pathogenesis

scientific article

Rules of engagement in the gut microbiome

scientific article published on 01 November 2018

Significance of the microbiome in obstructive lung disease

scientific article published on 8 February 2012

Sinus Microbiome Diversity Depletion and Corynebacterium tuberculostearicum Enrichment Mediates Rhinosinusitis ⬇️

scientific article published on September 12, 2012

Strain-dependent induction of neutrophil histamine production and cell death by Pseudomonas aeruginosa

scientific article published on 10 November 2011

Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis

scientific article published on 01 April 2022

The Children's Respiratory and Environmental Workgroup (CREW) birth cohort consortium: design, methods, and study population

scientific article published on 10 June 2019

The airway microbiome in patients with severe asthma: Associations with disease features and severity.

scientific article published on 25 July 2015

The gut microbiome: Relationships with disease and opportunities for therapy

scientific article published on 15 October 2018

The human microbiome in the 21st century

scientific article published on 16 October 2020

The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients

scientific article

The microbiome and development of allergic disease

scientific article published on 15 February 2016

Unconjugated bilirubin is associated with protection from early-life wheeze and childhood asthma

scientific article published in 2021

Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens

scientific article

Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise

scientific article

Viable bacterial colonization is highly limited in the human intestine in utero

scientific article published on 24 February 2020

Widespread colonization of the lung by Tropheryma whipplei in HIV infection

scientific article published on May 2013

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