Search filters

List of works by Joseph Petrosino

16S gut community of the Cameron County Hispanic Cohort

scientific article

A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America.

scientific article published on 14 March 2018

A catalog of reference genomes from the human microbiome

scientific article

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy

scientific article published in 2012

A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis

scientific article

A type VII secretion system of Streptococcus gallolyticus subsp. gallolyticus contributes to gut colonization and the development of colon tumors

scientific article published on 06 January 2021

Alcohol use alters the colonic mucosa-associated gut microbiota in humans

scientific article published on 17 September 2020

Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome

scientific article published on 18 April 2016

Antibiotic-mediated bacteriome depletion in ApcMin/+ mice is associated with reduction in mucus-producing goblet cells and increased colorectal cancer progression.

scientific article

Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis

scientific article published on 29 September 2015

Association of Maternal Gestational Weight Gain With the Infant Fecal Microbiota

scientific article

Association of nasopharyngeal microbiota profiles with bronchiolitis severity in infants hospitalised for bronchiolitis

scientific article

Associations of Nasopharyngeal Metabolome and Microbiome with Severity Among Infants with Bronchiolitis: A Multi-omic Analysis

scientific article published on 21 May 2017

Bacteroides ovatus ATCC 8483 monotherapy is superior to traditional fecal transplant and multi-strain bacteriotherapy in a murine colitis model

scientific article published on 21 January 2019

Baseline oral microbiome and all-cancer incidence in a cohort of non-smoking Mexican American women

scientific article published on 04 December 2020

Bioactivity and Bioavailability of Ginsenosides are Dependent on the Glycosidase Activities of the A/J Mouse Intestinal Microbiome Defined by Pyrosequencing ⬇️

scientific article published on December 20, 2012

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants

scientific article published on 6 June 2017

Changes in cystic fibrosis airway microbiota at pulmonary exacerbation

scientific article

Characterization of the human gut microbiome during travelers' diarrhea

scientific article published on January 2015

Characterization of the rat oral microbiome and the effects of dietary nitrate

scientific article

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

scientific article (publication date: March 2011)

Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence

scientific article

Circulating 25-hydroxyvitamin D, nasopharyngeal microbiota, and bronchiolitis severity

scientific article published on 13 November 2018

Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing

scientific article published on 26 February 2020

Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 1A ⬇️

scientific article (publication date: 11 April 2013)

Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome.

scientific article

Complete Genome Sequence of Vibrio gazogenes ATCC 43942.

scientific article

Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes

scientific article

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

scientific article

Conjunctival Microbiome Changes Associated With Soft Contact Lens and Orthokeratology Lens Wearing

scientific article

Correction: Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study

scientific article published on 23 August 2018

Decade-long bacterial community dynamics in cystic fibrosis airways

scientific article

Decreased microbiota diversity associated with urinary tract infection in a trial of bacterial interference.

scientific article published on 3 June 2015

Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples

scientific article

Development of the cutaneous microbiome in the preterm infant: A prospective longitudinal study

scientific article published on 27 April 2017

Dietary inflammatory potential in relation to the gut microbiome: results from a cross-sectional study

scientific article published on 01 June 2020

Early nasal microbiota and acute respiratory infections during the first years of life

scientific article published on 10 May 2019

Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens

scientific article published on 24 August 2011

Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study.

scientific article

Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection

scientific article published on 28 September 2020

Evidence of recombination in coronaviruses implicating pangolin origins of nCoV-2019

scientific article published on 13 February 2020

Frequency of Tongue Cleaning Impacts the Human Tongue Microbiome Composition and Enterosalivary Circulation of Nitrate

article

Fructan-sensitive children with irritable bowel syndrome have distinct gut microbiome signatures

scientific article published on 13 December 2020

Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors.

scientific article published on 8 May 2017

Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome.

scientific article

Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display

scientific article

Genetic and Environmental Determinants of Otitis Media in an Indigenous Filipino Population

scientific article published on 02 August 2016

Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium

scientific article

Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants

scientific article

Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients.

scientific article published on 2 November 2017

Gut microbiota as a source of a surrogate antigen that triggers autoimmunity in an immune privileged site

scientific article

Haemophilus-Dominant Nasopharyngeal Microbiota Is Associated With Delayed Clearance of Respiratory Syncytial Virus in Infants Hospitalized for Bronchiolitis

scientific article published on 01 May 2019

Host Response to Probiotics Determined by Nutritional Status of Rotavirus‐infected Neonatal Mice ⬇️

scientific article published on September 1, 2012

Household siblings and nasal and fecal microbiota in infants.

scientific article published on 22 December 2016

Houston hurricane Harvey health (Houston-3H) study: assessment of allergic symptoms and stress after hurricane Harvey flooding

scientific article published on 19 January 2021

Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis

scientific article published on 16 December 2020

Human milk oligosaccharides, milk microbiome and infant gut microbiome modulate neonatal rotavirus infection

scientific article published in Nature Communications

Identification of novel and cross-species seroreactive proteins from Bacillus anthracis using a ligation-independent cloning-based, SOS-inducible expression system

scientific article

Impact of age-related mitochondrial dysfunction and exercise on intestinal microbiota composition

scientific article

Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum

scientific article

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: an observational study

journal article published in 2017

Increased Moraxella and Streptococcus species abundance after severe bronchiolitis is associated with recurrent wheezing

scientific article published on 15 November 2019

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis.

scientific article

Initial insights into bacterial succession during human decomposition

scientific article published on 28 November 2014

Insular resting state functional connectivity is associated with gut microbiota diversity

scientific article published on 17 June 2019

Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi.

scientific article

Leveraging Human Microbiome Features to Diagnose and Stratify Children with Irritable Bowel Syndrome

scientific article published on 17 April 2019

Longitudinal Changes in Early Nasal Microbiota and the Risk of Childhood Asthma

scientific article published on 15 September 2020

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

scientific article

Lung tissue microbial profile in lung cancer is distinct from emphysema

Lyophilized Fecal Microbiota Transplantation Capsules for Recurrent Clostridium difficile Infection

scientific article published on 4 October 2017

Maternal Fish Consumption in Pregnancy Is Associated with a Bifidobacterium-Dominant Microbiome Profile in Infants

scientific article published on 19 December 2019

Maternal micronutrients can modify colonic mucosal microbiota maturation in murine offspring.

scientific article

Mathematical modeling of primary succession of murine intestinal microbiota.

scientific article

Maximal viral information recovery from sequence data using VirMAP

scientific article published in Nature Communications

Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012.

scientific article

Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC.

scientific article

Metagenomic Analyses of Alcohol Induced Pathogenic Alterations in the Intestinal Microbiome and the Effect of Lactobacillus rhamnosus GG Treatment ⬇️

scientific article published on January 9, 2013

Metagenomic Information Recovery from Human Stool Samples Is Influenced by Sequencing Depth and Profiling Method

scientific article published on 21 November 2020

Metagenomic analysis of nitrate-reducing bacteria in the oral cavity: implications for nitric oxide homeostasis.

scientific article

Metagenomic pyrosequencing and microbial identification

scientific article

Metagenomics of the faecal virome indicate a cumulative effect of enterovirus and gluten amount on the risk of coeliac disease autoimmunity in genetically at risk children: the TEDDY study

scientific article published on 19 November 2019

Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring

scientific article

Microbial community assembly and metabolic function during mammalian corpse decomposition.

scientific article published on 10 December 2015

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic

scientific article

Microbiome-Epigenome Interactions and the Environmental Origins of Inflammatory Bowel Diseases

scientific article published on 21 August 2015

Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders

scientific article

Middle ear microbiome differences in indigenous Filipinos with chronic otitis media due to a duplication in the A2ML1 gene

scientific article

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Monotonous diets protect against acute colitis in mice: epidemiologic and therapeutic implications.

scientific article

Morphine Promotes Colonization of Anastomotic Tissues with Collagenase - Producing Enterococcus faecalis and Causes Leak

scientific article published on 16 August 2016

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

scientific article published on 29 May 2019

Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection

scientific article published on 14 March 2022

Murine model of chemotherapy-induced extraintestinal pathogenic Escherichia coli translocation

scientific article published in June 2015

Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota

scientific article

Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants: A Case-Control Study

scientific article published on 21 December 2016

Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis

scientific article published on 22 December 2013

Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals

scientific article published on 11 December 2020

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

scientific article published on 27 July 2020

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

scientific article published on 25 August 2021

Oral microbiota reveals signs of acculturation in Mexican American women.

scientific article

Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032

scientific article

Promise and Pragmatism in Clinical Microbiome Research

scientific article published on 21 July 2015

Prospective virome analyses in young children at increased genetic risk for type 1 diabetes

scientific article published on 02 December 2019

Respiratory syncytial virus and rhinovirus bronchiolitis are associated with distinct metabolic pathways

scientific article published on 25 December 2017

Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota

scientific article published on 06 April 2016

Rotavirus infection induces glycan availability to promote ileum-specific changes in the microbiome aiding rotavirus virulence

scientific article published on 13 May 2020

SMRT Sequencing of Paramecium Bursaria Chlorella Virus-1 Reveals Diverse Methylation Stability in Adenines Targeted by Restriction Modification Systems

scientific article published on 19 May 2020

Sa1920 – Oral Health and the Colonic Mucosa-Associated Gut Microbiota in Individuals Undergoing Screening Colonoscopy

scientific article published on 07 May 2019

Safety and preliminary efficacy of orally administered lyophilized fecal microbiota product compared with frozen product given by enema for recurrent Clostridium difficile infection: A randomized clinical trial

scientific article published in PLoS ONE

Saturated and Unsaturated Dietary Fats Differentially Modulate Ethanol-Induced Changes in Gut Microbiome and Metabolome in a Mouse Model of Alcoholic Liver Disease

scientific article

Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes

scientific article published on 4 May 2015

Serum LL-37 level is associated with severity of bronchiolitis and viral etiology

scientific article published on 24 May 2017

Serum Metabolome Is Associated With the Nasopharyngeal Microbiota and Disease Severity Among Infants With Bronchiolitis

scientific article published on 01 May 2019

Serum cathelicidin, nasopharyngeal microbiota, and disease severity among infants hospitalized with bronchiolitis.

scientific article

Sphingolipid metabolism potential in fecal microbiome and bronchiolitis in infants: a case-control study

scientific article

Stabilization of the murine gut microbiome following weaning

scientific article

Structure and function of the healthy pre-adolescent pediatric gut microbiome

scientific article published on 26 August 2015

Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus

scientific article

Successful collection of stool samples for microbiome analyses from a large community-based population of elderly men.

scientific article published on 6 July 2017

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

scientific article

Temporal changes in gastrointestinal fungi and the risk of autoimmunity during early childhood: the TEDDY study

scientific article published on 01 January 2022

Temporal development of the gut microbiome in early childhood from the TEDDY study

scientific article published in Nature

The BE GONE trial study protocol: a randomized crossover dietary intervention of dry beans targeting the gut microbiome of overweight and obese patients with a history of colorectal polyps or cancer

scientific article published on 18 December 2019

The Changing Landscape of Type 1 Diabetes: Recent Developments and Future Frontiers ⬇️

scientific article published on October 1, 2013

The Fecal Microbiome in Infants with Biliary Atresia Associates with Bile Flow after Kasai Portoenterostomy

scientific article published on 05 March 2020

The Fecal Microbiota Profile and Bronchiolitis in Infants

scientific article published on 27 June 2016

The Gut Microbiome of the Vector Lutzomyia longipalpis Is Essential for Survival of Leishmania infantum

scientific article published on 17 January 2017

The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters ⬇️

scientific article published on November 19, 2012

The Human Microbiome Project: a community resource for the healthy human microbiome

scientific article

The Impact of Diabetes on the Gut and Salivary IgA Microbiomes

scientific article published on 08 September 2020

The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis

scientific article published on 3 January 2018

The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse

scientific article

The dynamics of a family's gut microbiota reveal variations on a theme ⬇️

scientific article

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment

scientific article

The gut microbiome modulates colon tumorigenesis

scientific article

The gut mycobiome of the Human Microbiome Project healthy cohort.

scientific article

The host effects of Gambusia affinis with an antibiotic-disrupted microbiome

scientific article published on 13 October 2015

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

scientific article published in Nature

The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition

scientific article

The placenta harbors a unique microbiome

scientific article

The role of gut microbiota in fetal methylmercury exposure: Insights from a pilot study

scientific article published on 25 November 2015

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis

scientific article published on 4 June 2015

Transmission event of SARS-CoV-2 Delta variant reveals multiple vaccine breakthrough infections

scientific article

Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections

scientific article

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes

scientific article published on 01 August 2019

Universal microbial diagnostics using random DNA probes

scientific article published on 28 September 2016

Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

scientific article published on 04 March 2019

Water management impacts rice methylmercury and the soil microbiome

scientific article published on 19 July 2016

Paulina is supported by:

About Paulina

Help