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List of works by Lira Mamanova

A cell atlas of human thymic development defines T cell repertoire formation

scientific article published on 01 February 2020

A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease ⬇️

scientific article

A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing ⬇️

scientific article

A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

scientific article published in 2022

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq

scientific article published on 01 August 2018

Cells of the human intestinal tract mapped across space and time

Cross-tissue immune cell analysis reveals tissue-specific adaptations and clonal architecture across the human body

scientific article

Cross-tissue immune cell analysis reveals tissue-specific features in humans

scientific article published on 13 May 2022

Decoding human fetal liver haematopoiesis

scientific article published on 09 October 2019

Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer

scientific article published on 03 August 2016

Erratum: Target-enrichment strategies for next-generation sequencing

scholarly article published in Nature Methods

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

scientific article

FRT-seq: amplification-free, strand-specific transcriptome sequencing

scientific article

Genome-wide scan for premature hypertension supports linkage to chromosome 2 in a large Kyrgyz family

scientific article

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

scientific article published on 21 April 2020

Local and systemic responses to SARS-CoV-2 infection in children and adults

scientific article published on 22 December 2021

Low-bias, strand-specific transcriptome Illumina sequencing by on-flowcell reverse transcription (FRT-seq) ⬇️

scientific article published on October 20, 2011

Mutation spectrum revealed by breakpoint sequencing of human germline CNVs

scientific article published on 4 April 2010

Setting Up a Single-Cell Genomic Laboratory

scientific article published on 01 January 2019

Single cell derived mRNA signals across human kidney tumors

scientific article published on 23 June 2021

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

scholarly article by Christoph Muus published in March 2021

Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis

scientific article published on 21 September 2020

Spatially resolved multiomics of human cardiac niches

scientific article published in 2023

Spatiotemporal immune zonation of the human kidney

scientific article

Target-enrichment strategies for next-generation sequencing

scientific article

The local and systemic response to SARS-CoV-2 infection in children and adults

scientific article published on 15 March 2021

Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell

article by Gerda Kildisiute et al published February 2021 in Science Advances

Ultrahigh thermal conductivity confirmed in boron arsenide

scientific article

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