Search filters

List of works by Andrew Phillips

A Compositional Approach to the Stochastic Dynamics of Gene Networks

article

A Mechanistic Model for Predicting Cell Surface Presentation of Competing Peptides by MHC Class I Molecules

scientific article published on 05 July 2018

A Process Model of Actin Polymerisation

A computational method for automated characterization of genetic components

scientific article published on 14 March 2014

A deep learning model for predicting next-generation sequencing depth from DNA sequence

scientific article published on 19 July 2021

A logic programming language for computational nucleic acid devices

scientific article published on 07 December 2018

A peptide filtering relation quantifies MHC class I peptide optimization

scientific article published in October 2011

A process model of Rho GTP-binding proteins

A programming language for composable DNA circuits

scientific article

A spatially localized architecture for fast and modular DNA computing

scientific article

A strand graph semantics for DNA-based computation

scientific article published on June 2016

Abstractions for DNA circuit design

scientific article published on 20 July 2011

Bio Simulators: a web UI for biological simulation

scientific article

Characterization of Intrinsic Properties of Promoters

scientific article

Compositionality, stochasticity, and cooperativity in dynamic models of gene regulation

scientific article published on 14 November 2007

Computational design of nucleic acid feedback control circuits

scientific article published on 6 August 2014

Computational modeling of synthetic microbial biofilms.

scientific article published on 10 August 2012

Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics

scientific article

Computing with biological switches and clocks

scientific article published on 01 June 2018

DNA-based communication in populations of synthetic protocells

scientific article published on 04 March 2019

Design and analysis of DNA strand displacement devices using probabilistic model checking

scientific article published on 4 January 2012

Distributed DNA-based Communication in Populations of Synthetic Protocells: Supporting Information

scholarly article published 4 January 2019

Domain-specific programming languages for computational nucleic acid systems

scientific article published on 26 June 2020

Escherichia coli can survive stress by noisy growth modulation

scientific article published in Nature Communications

Interpretation of morphogen gradients by a synthetic bistable circuit

scientific article published on 02 November 2020

Modular verification of chemical reaction network encodings via serializability analysis

scientific article published on June 2016

Orthogonal intercellular signaling for programmed spatial behavior

scientific article published on 25 January 2016

Predicting DNA hybridization kinetics from sequence

scientific article published on 6 November 2017

Probabilistic Analysis of Localized DNA Hybridization Circuits.

scientific article

Programmable chemical controllers made from DNA.

scientific article published on 29 September 2013

Selector function of MHC I molecules is determined by protein plasticity

scientific article

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

scientific article published on 19 February 2020

Synthesizing and tuning stochastic chemical reaction networks with specified behaviours

scientific article published on 01 August 2018

Towards programming languages for genetic engineering of living cells

scientific article

Towards the rational design of synthetic cells with prescribed population dynamics

scientific article

Visual DSD: a design and analysis tool for DNA strand displacement systems ⬇️

scientific article published on October 7, 2011

Paulina is supported by:

About Paulina

Help