List of works - Peter R. Baker

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by s

scientific article

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

scientific article published on 3 June 2005

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

scientific article

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides

scientific article

Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

scientific article published on April 2016

Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome

scientific article published on 15 March 2007

Improved identification of O-linked glycopeptides from ETD data with optimized scoring for different charge states and cleavage specificities.

scientific article

Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring

scientific article

In-depth analysis of tandem mass spectrometry data from disparate instrument types

scientific article

MS-viewer: a web-based spectral viewer for proteomics results

scientific article

Mass spectrometric analysis, automated identification and complete annotation of O-linked glycopeptides

scientific article published on January 2010

Mass spectrometric characterization of the affinity-purified human 26S proteasome complex

scientific article

Matching cross-linked peptide spectra: only as good as the worse identification

scientific article published on 12 December 2013

Modification site localization scoring integrated into a search engine.

scientific article

Proteomics Standards Initiative Extended FASTA Format

scientific article published on 23 May 2019

Quantitative analysis of synaptic phosphorylation and protein expression

scientific article

The effectiveness of filtering glycopeptide peak list files for Y ions

scientific article published on 17 February 2020

The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry

scientific article

Use of a glycosylation site database to improve glycopeptide identification from complex mixtures.

scientific article

List of works by Peter R. Baker

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by s

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides

Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome

Improved identification of O-linked glycopeptides from ETD data with optimized scoring for different charge states and cleavage specificities.

Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring

In-depth analysis of tandem mass spectrometry data from disparate instrument types

MS-viewer: a web-based spectral viewer for proteomics results

Mass spectrometric analysis, automated identification and complete annotation of O-linked glycopeptides

Mass spectrometric characterization of the affinity-purified human 26S proteasome complex

Matching cross-linked peptide spectra: only as good as the worse identification

Modification site localization scoring integrated into a search engine.

Proteomics Standards Initiative Extended FASTA Format

Quantitative analysis of synaptic phosphorylation and protein expression

The effectiveness of filtering glycopeptide peak list files for Y ions

The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry

Use of a glycosylation site database to improve glycopeptide identification from complex mixtures.