List of works - Trudy Wassenaar

2019_nCoV/SARS-CoV-2: rapid classification of betacoronaviruses and identification of Traditional Chinese Medicine as potential origin of zoonotic coronaviruses

scientific article published on 28 February 2020

A cellular metalloproteinase activates Vibrio cholerae pro-cytolysin

scientific article published on 5 April 2004

A secreted antibacterial neuropeptide shapes the microbiome of Hydra

scientific article published on 26 September 2017

An Overview of Genome Databases

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli

scientific article published on 28 August 2012

Antimicrobial resistance in zoonotic bacteria: lessons learned from host-specific pathogens

scientific article published on December 2008

BCG vaccination early in life does not improve COVID-19 outcome of elderly populations, based on nationally reported data

scientific article published on 30 July 2020

Binding of Escherichia coli hemolysin and activation of the target cells is not receptor-dependent

scientific article published on 30 August 2005

Bioinformatics for Microbiologists: An Introduction

Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray

scientific article published on January 2007

Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera

scientific article

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species

scientific article published on 19 November 2019

Comparison of 61 sequenced Escherichia coli genomes

scientific article

Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak

scientific article published in 2022

Complete Sequence of Probiotic Symbioflor 2 Escherichia coli Strain G3/10 and Draft Sequences of Symbioflor 2 E. coli Strains G1/2, G4/9, G5, G6/7, and G8

scientific article published on 5 March 2015

Contagion on the Internet

scientific article (publication date: March 2002)

Cytolethal distending toxin (CDT)-negative Campylobacter jejuni strains and anti-CDT neutralizing antibodies are induced during human infection but not during colonization in chickens

scientific article published on May 2005

Development and application of a new scheme for typing Campylobacter jejuni and Campylobacter coli by PCR-based restriction fragment length polymorphism analysis

scientific article

Development of a strain-specific molecular method for quantitating individual campylobacter strains in mixed populations

scientific article published on 15 February 2008

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

scientific article

Ebolavirus comparative genomics

scientific article (publication date: September 2015)

Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses

scientific article

Evolution of Microbial Communities; or, On the Origins of Bacterial Species

Evolutionary implications of microbial genome tetranucleotide frequency biases

scientific article

Expression of Genes and Proteins

article

Genetic differentiation of Campylobacter jejuni.

scientific article published on December 2002

Genome update: the 1000th genome--a cautionary tale

scientific article published on 21 January 2010

Genomic Properties: Length, Base Composition and DNA Structures

article

Genomic characterization of Campylobacter jejuni strain M1.

scientific article

Genotyping of human and porcine Yersinia enterocolitica, Yersinia intermedia, and Yersinia bercovieri strains from Switzerland by amplified fragment length polymorphism analysis

scientific article

Homonucleotide stretches in chromosomal DNA of Campylobacter jejuni display high frequency polymorphism as detected by direct PCR analysis

scientific article published in June 2002

Identification of genetic differences between two Campylobacter jejuni strains with different colonization potentials.

scientific article

Identification of hyperinvasive Campylobacter jejuni strains isolated from poultry and human clinical sources.

scientific article

Identification of the membrane penetrating domain of Vibrio cholerae cytolysin as a beta-barrel structure

scientific article

Insights from 100 Years of Research with Probiotic E. Coli

scientific article

Insights from 20 years of bacterial genome sequencing

scientific article

Integrated MRSA-Management (IMM) with prolonged decolonization treatment after hospital discharge is effective: a single centre, non-randomised open-label trial

scientific article published on 14 June 2016

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

scientific article published on 26 January 2021

Metagenomics of Microbial Communities

Method comparison for enhanced recovery, isolation and qualitative detection of C. jejuni and C. coli from wastewater effluent samples

scientific article

Methods to Compare Genomes The First Examples

Microbial Communities: Core and Pan-Genomics

Microbial Genome Sequences: A New Era in Microbiology

Molecular typing of pathogens.

scientific article published on November 2003

Of Proteins, Genomes, and Proteomes

On the origins of a Vibrio species

scientific article published on January 2010

Pro-inflammatory feedback activation cycle evoked by attack of Vibrio cholerae cytolysin on human neutrophil granulocytes

scientific article published on 20 September 2007

Putative identification of an amphipathic alpha-helical sequence in hemolysin of Escherichia coli (HlyA) involved in transmembrane pore formation

scientific article

Re-analysis of the risks attributed to ciprofloxacin-resistant Campylobacter jejuni infections

scientific article published on 8 April 2007

Review and phylogenetic analysis of qac genes that reduce susceptibility to quaternary ammonium compounds in Staphylococcus species

scientific article

Safety aspects and implications of regulation of probiotic bacteria in food and food supplements

scientific article published on August 2008

Sequences as Biological Information: Cells Obey the Laws of Chemistry and Physics

Structure and genotypic plasticity of the Campylobacter fetus sap locus ⬇️

scientific article published on May 1, 2003

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

scientific article published on 28 December 2017

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

scientific article published on 12 May 2006

The Challenges of Programming: A Brief Introduction

The prediction of virulence based on presence of virulence genes in E. coli may not always be accurate

scientific article published on 19 June 2015

The qacC Gene Has Recently Spread between Rolling Circle Plasmids of Staphylococcus, Indicative of a Novel Gene Transfer Mechanism

scientific article published on 27 September 2016

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA.

scientific article published on 10 August 2017

Transcriptomics: Translated and Untranslated RNA

Use of antimicrobial agents in veterinary medicine and implications for human health

scientific article

Veillonella, Firmicutes: Microbes disguised as Gram negatives

scientific article

Virulence genes in a probiotic E. coli product with a recorded long history of safe use

scientific article

List of works by Trudy Wassenaar

2019_nCoV/SARS-CoV-2: rapid classification of betacoronaviruses and identification of Traditional Chinese Medicine as potential origin of zoonotic coronaviruses

A cellular metalloproteinase activates Vibrio cholerae pro-cytolysin

A secreted antibacterial neuropeptide shapes the microbiome of Hydra

An Overview of Genome Databases

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli

Antimicrobial resistance in zoonotic bacteria: lessons learned from host-specific pathogens

BCG vaccination early in life does not improve COVID-19 outcome of elderly populations, based on nationally reported data

Binding of Escherichia coli hemolysin and activation of the target cells is not receptor-dependent

Bioinformatics for Microbiologists: An Introduction

Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray

Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species

Comparison of 61 sequenced Escherichia coli genomes

Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak

Complete Sequence of Probiotic Symbioflor 2 Escherichia coli Strain G3/10 and Draft Sequences of Symbioflor 2 E. coli Strains G1/2, G4/9, G5, G6/7, and G8

Contagion on the Internet

Cytolethal distending toxin (CDT)-negative Campylobacter jejuni strains and anti-CDT neutralizing antibodies are induced during human infection but not during colonization in chickens

Development and application of a new scheme for typing Campylobacter jejuni and Campylobacter coli by PCR-based restriction fragment length polymorphism analysis

Development of a strain-specific molecular method for quantitating individual campylobacter strains in mixed populations

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

Ebolavirus comparative genomics

Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses

Evolution of Microbial Communities; or, On the Origins of Bacterial Species

Evolutionary implications of microbial genome tetranucleotide frequency biases

Expression of Genes and Proteins

Genetic differentiation of Campylobacter jejuni.

Genome update: the 1000th genome--a cautionary tale

Genomic Properties: Length, Base Composition and DNA Structures

Genomic characterization of Campylobacter jejuni strain M1.

Genotyping of human and porcine Yersinia enterocolitica, Yersinia intermedia, and Yersinia bercovieri strains from Switzerland by amplified fragment length polymorphism analysis

Homonucleotide stretches in chromosomal DNA of Campylobacter jejuni display high frequency polymorphism as detected by direct PCR analysis

Identification of genetic differences between two Campylobacter jejuni strains with different colonization potentials.

Identification of hyperinvasive Campylobacter jejuni strains isolated from poultry and human clinical sources.

Identification of the membrane penetrating domain of Vibrio cholerae cytolysin as a beta-barrel structure

Insights from 100 Years of Research with Probiotic E. Coli

Insights from 20 years of bacterial genome sequencing

Integrated MRSA-Management (IMM) with prolonged decolonization treatment after hospital discharge is effective: a single centre, non-randomised open-label trial

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Metagenomics of Microbial Communities

Method comparison for enhanced recovery, isolation and qualitative detection of C. jejuni and C. coli from wastewater effluent samples

Methods to Compare Genomes The First Examples

Microbial Communities: Core and Pan-Genomics

Microbial Genome Sequences: A New Era in Microbiology

Molecular typing of pathogens.

Of Proteins, Genomes, and Proteomes

On the origins of a Vibrio species

Pro-inflammatory feedback activation cycle evoked by attack of Vibrio cholerae cytolysin on human neutrophil granulocytes

Putative identification of an amphipathic alpha-helical sequence in hemolysin of Escherichia coli (HlyA) involved in transmembrane pore formation

Re-analysis of the risks attributed to ciprofloxacin-resistant Campylobacter jejuni infections

Review and phylogenetic analysis of qac genes that reduce susceptibility to quaternary ammonium compounds in Staphylococcus species

Safety aspects and implications of regulation of probiotic bacteria in food and food supplements

Sequences as Biological Information: Cells Obey the Laws of Chemistry and Physics

Structure and genotypic plasticity of the Campylobacter fetus sap locus ⬇️

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

The Challenges of Programming: A Brief Introduction

The prediction of virulence based on presence of virulence genes in E. coli may not always be accurate

The qacC Gene Has Recently Spread between Rolling Circle Plasmids of Staphylococcus, Indicative of a Novel Gene Transfer Mechanism

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA.

Transcriptomics: Translated and Untranslated RNA

Use of antimicrobial agents in veterinary medicine and implications for human health

Veillonella, Firmicutes: Microbes disguised as Gram negatives

Virulence genes in a probiotic E. coli product with a recorded long history of safe use

Word Frequencies and Repeats