List of works by Fabiano L Thompson

" Colwellia aromaticivorans" sp. nov., " Halocyntiibacter alkanivorans" sp. nov., and " Ulvibacter alkanivorans" sp. nov. Genome Sequences

A survey on cultivable heterotrophic bacteria inhabiting a thermally unstratified water column in an Atlantic Rainforest lake.

scientific article

Abrolhos bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data

scientific article (publication date: 2012)

Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae

scientific article

An extensive reef system at the Amazon River mouth

scientific article

An observational clinical case of Zika virus-associated neurological disease is associated with primary IgG response and enhanced TNF levels.

scientific article published on 17 May 2018

Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes

scientific article published in July 2005

Application of sliding-window discretization and minimization of stochastic complexity for the analysis of fAFLP genotyping fingerprint patterns of Vibrionaceae.

scientific article

Aura-biomes are present in the water layer above coral reef benthic macro-organisms.

scientific article

BaMBa: towards the integrated management of Brazilian marine environmental data

scientific article

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle

scientific article

Bacterial Community Diversity in the Brazilian Atlantic Forest Soils ⬇️

scientific article published on October 1, 2010

Bacterial community associated with healthy and diseased reef coral Mussismilia hispida from eastern Brazil

scientific article

Bacterial interactions and implications for oil biodegradation process in mangrove sediments

scientific article

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data

scientific article

Biodiversity of vibrios

scientific article

Buracas: Novel and unusual sinkhole-like features in the Abrolhos Bank

scholarly article by Alex C. Bastos published in November 2013

Cholesterol depletion induces transcriptional changes during skeletal muscle differentiation

scientific article

Cloning and Functional Characterization of Cycloartenol Synthase from the Red Seaweed Laurencia dendroidea.

scientific article

Coastal bacterioplankton community diversity along a latitudinal gradient in Latin America by means of V6 tag pyrosequencing.

scientific article

Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii.

scientific article

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions

scientific article published on 5 August 2014

Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus.

scientific article

Complete genome sequence of the marine fish pathogen Vibrio anguillarum harboring the pJM1 virulence plasmid and genomic comparison with other virulent strains of V. anguillarum and V. ordalii

scientific article

Conserved Pigment Profiles in Phylogenetically Diverse Symbiotic Bacteria Associated with the Corals Montastraea cavernosa and Mussismilia braziliensis

scientific article published on 18 July 2020

Conserved rhodolith microbiomes across environmental gradients of the Great Amazon Reef

scientific article published on 07 November 2020

Corrigendum to "Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan" [Syst. Appl. Microbiol. 40 (5) (2017) 290-296].

scientific article published on 18 October 2017

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

scientific article published on 31 October 2017

Corrigendum: The clinically approved antiviral drug sofosbuvir inhibits Zika virus replication

scientific article published on 24 April 2017

Corrigendum: Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov.

scientific article published on 4 November 2014

Culturable heterotrophic bacteria associated with healthy and bleached scleractinian Madracis decactis and the fireworm Hermodice carunculata from the remote St. Peter and St. Paul Archipelago, Brazil

scientific article published on 25 August 2013

Cultures of the Marine Bacterium Pseudovibrio denitrificans Ab134 Produce Bromotyrosine-Derived Alkaloids Previously Only Isolated from Marine Sponges.

scientific article published on 13 February 2017

Description of Alteromonas abrolhosensis sp. nov., isolated from sea water of Abrolhos Bank, Brazil

scientific article published on 18 January 2018

Description of Endozoicomonas arenosclerae sp. nov. using a genomic taxonomy approach

scientific article

Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study

scientific article

Development of standard methods for Zika virus propagation, titration, and purification

scientific article

Diseases leading to accelerated decline of reef corals in the largest South Atlantic reef complex (Abrolhos Bank, eastern Brazil).

scientific article

Diversity and antimicrobial potential of culturable heterotrophic bacteria associated with the endemic marine sponge Arenosclera brasiliensis

scientific article published on 17 June 2014

Diversity and ecological structure of vibrios in benthic and pelagic habitats along a latitudinal gradient in the Southwest Atlantic Ocean

scientific article

Diversity and pathogenic potential of vibrios isolated from Abrolhos Bank corals

scientific article

Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome

scientific article published on 9 January 2017

Diversity of Vibrios associated with reared clams in Galicia (NW Spain).

scientific article

Diversity of lactic acid bacteria of the bioethanol process.

scientific article

Draft Genome Sequence of Marine Flavobacterium Jejuia pallidilutea Strain 11shimoA1 and Pigmentation Mutants

scientific article

Draft Genome Sequence of Micrococcus sp. Strain MS-AsIII-49, an Arsenate-Reducing Isolate from Tropical Metal-Rich Sediment

scientific article published on 16 April 2015

Draft Genome Sequence of Muricauda sp. Strain K001 Isolated from a Marine Cyanobacterial Culture.

scientific article published on 31 May 2018

Draft Genome Sequence of Pseudoalteromonas sp. Strain PAB 2.2 Isolated from Abrolhos Bank (Brazil).

scientific article

Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4.

scientific article

Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13.

scientific article

Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota

scientific article

Dynamics of coral reef benthic assemblages of the Abrolhos Bank, eastern Brazil: inferences on natural and anthropogenic drivers

scientific article

Ecogenomics and Taxonomy of Cyanobacteria Phylum

scientific article

Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia

scientific article published on 14 February 2020

Ecological diversification in the Bacillus cereus Group.

scientific article

Effect of N-acetyl-D-glucosamine on gene expression in Vibrio parahaemolyticus

article

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection

article

Enterovibrio baiacu sp. nov

scientific article published on 16 October 2019

Environmental and Sanitary Conditions of Guanabara Bay, Rio de Janeiro

scientific article

Environmental conditions affect activity and associated microorganisms of marine sponges

scientific article published on 20 September 2018

Environmental modulation of the proteomic profiles from closely phylogenetically related populations of the red seaweed

scientific article published on 02 April 2019

Erratum to: Description of Endozoicomonas arenosclerae sp. nov. using a genomic taxonomy approach

scientific article published on 24 May 2016

Exploring the Genome of Cheese Starter Lactic Acid Bacterium Lactococcus lactis subsp. lactis CECT 4433

scientific article

Exploring the Genome of a Butyric Acid Producer, Clostridium butyricum INCQS635.

scientific article published on 20 November 2014

Finding diagnostic phenotypic features of Photobacterium in the genome sequences

scientific article published on 28 February 2015

Fluorescent amplified fragment length polymorphism and repetitive extragenic palindrome-PCR fingerprinting reveal host-specific genetic diversity of Vibrio halioticoli-like strains isolated from the gut of Japanese abalone

scientific article published on August 2002

Genetic diversity and connectivity of Flaccisagitta enflata (Chaetognatha: Sagittidae) in the tropical Atlantic ocean (northeastern Brazil)

scientific article published on 06 May 2020

Genome Sequences of sp. nov. and sp. nov., Isolated from Rhodoliths

scientific article published on 15 November 2018

Genome sequence of Shewanella corallii strain A687 isolated from pufferfish (Sphoeroides spengleri)

scientific article published on 17 February 2020

Genome sequence of the bacterioplanktonic, mixotrophic Vibrio campbellii strain PEL22A, isolated in the Abrolhos Bank.

scientific article

Genome sequence of the human pathogen Vibrio cholerae Amazonia

scientific article published on October 2011

Genome sequence of the marine bacterium Vibrio campbellii DS40M4, isolated from open ocean water

scientific article published on February 2012

Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9.

scientific article

Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume

scientific article published on 15 January 2020

Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes

scientific article published on 05 February 2020

Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake

scientific article

Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire

scientific article

Genomic diversity of clinical and environmental Vibrio cholerae strains isolated in Brazil between 1991 and 2001 as revealed by fluorescent amplified fragment length polymorphism analysis

scientific article

Genomic taxonomy of Vibrios

scientific article

Genomic taxonomy of the genus prochlorococcus.

scientific article

Genotype to phenotype: identification of diagnostic vibrio phenotypes using whole genome sequences

scientific article published in February 2014

Glacial-interglacial transitions in microbiomes recorded in deep-sea sediments from the western equatorial Atlantic

scientific article published on 19 July 2020

Halomonas coralii sp. nov. Isolated from Mussismilia braziliensis

scientific article published on 04 April 2019

Identification of non-coding RNAs in environmental vibrios

scientific article

Identification of vibrio cholerae and vibrio mimicus by multilocus sequence analysis (MLSA).

scientific article

Immediate and long-term impacts of one of the worst mining tailing dam failure worldwide (Bento Rodrigues, Minas Gerais, Brazil)

scientific article published on 23 November 2020

Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps

scientific article

Inferring the evolutionary history of vibrios by means of multilocus sequence analysis

scientific article

Inhibitory effect of microalgae and cyanobacteria extracts on influenza virus replication and neuraminidase activity

scientific article published on 26 October 2018

Insights from genome of Clostridium butyricum INCQS635 reveal mechanisms to convert complex sugars for biofuel production

scientific article published on 2 November 2015

Insights into the Microbial and Viral Dynamics of a Coastal Downwelling-Upwelling Transition

scientific article

Insights on the freshwater microbiomes metabolic changes associated with the world's largest mining disaster

scientific article published on 09 November 2018

Integrative Taxonomy of Amazon Reefs' Arenosclera spp.: A New Clade in the Haplosclerida (Demospongiae) ⬇️

International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Aeromonadaceae, Vibrionaceae and related organisms Minutes of the meeting, 13 November 2017, Chicago, USA

scientific article published on 09 May 2018

Marine Biotechnology in Brazil: Recent Developments and Its Potential for Innovation

article

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

scientific article

Marinobacterium coralli sp. nov., isolated from mucus of coral (Mussismilia hispida).

scientific article

Marinomonas brasilensis sp. nov., isolated from the coral Mussismilia hispida, and reclassification of Marinomonas basaltis as a later heterotypic synonym of Marinomonas communis.

scientific article

Metagenomic Analysis of the Whole Gut Microbiota in Brazilian Termitidae Termites Cornitermes cumulans, Cyrilliotermes strictinasus, Syntermes dirus, Nasutitermes jaraguae, Nasutitermes aquilinus, Grigiotermes bequaerti, and Orthognathotermes mirim

scientific article published on 05 April 2019

Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals.

scientific article published on 15 January 2013

Metagenomics Sheds Light on the Ecology of Marine Microbes and Their Viruses

scientific article published on 21 June 2018

Metagenomics of Coral Reefs Under Phase Shift and High Hydrodynamics

scientific article published on 04 October 2018

Metagenomics sheds light on the metabolic repertoire of oil-biodegrading microbes of the South Atlantic Ocean

scientific article published on 06 March 2019

Metal concentrations and biological effects from one of the largest mining disasters in the world (Brumadinho, Minas Gerais, Brazil)

scientific article published on 03 April 2020

Metaproteomics reveals metabolic transitions between healthy and diseased stony coral Mussismilia braziliensis

scientific article published on 4 August 2016

Microbial Community Profile and Water Quality in a Protected Area of the Caatinga Biome.

scientific article published on 16 February 2016

Microbial and Functional Biodiversity Patterns in Sponges that Accumulate Bromopyrrole Alkaloids Suggest Horizontal Gene Transfer of Halogenase Genes.

scientific article published on 15 March 2018

Microbial and sponge loops modify fish production in phase-shifting coral reefs

scientific article published on 26 March 2015

Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean

scientific article

Microbial genomic taxonomy

scientific article

Microbial processes driving coral reef organic carbon flow.

scientific article published on 9 May 2017

Microbial taxonomy in the post-genomic era: rebuilding from scratch?

scientific article published on 23 December 2014

Microbiota of the major South Atlantic reef building coral Mussismilia

scientific article

Molecular Mechanisms for Microbe Recognition and Defense by the Red Seaweed Laurencia dendroidea

scientific article published in November 2017

Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms

scientific article published on 01 June 2004

Multilocus Sequence Analysis of Close Relatives Vibrio anguillarum and Vibrio ordalii

scientific article

Multilocus sequence analysis of Brazilian Rhizobium microsymbionts of common bean (Phaseolus vulgaris L.) reveals unexpected taxonomic diversity

scientific article

Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species

scientific article published on 4 May 2007

Multiple Symbiodinium Strains Are Hosted by the Brazilian Endemic Corals Mussismilia spp.

scientific article

Mussismilia braziliensis White Plague Disease Is Characterized by an Affected Coral Immune System and Dysbiosis

scientific article published on 01 October 2020

Mutation is the Main Driving Force in the Diversification of the Vibrio splendidus Clade

scientific article published on 01 January 2009

New Insights on the terpenome of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta)

scientific article published on 10 February 2015

New bacterial and archaeal lineages discovered in organic rich sediments of a large tropical Bay

scientific article published on 17 June 2020

New methods for the analysis of binarized BIOLOG GN data of Vibrio species: minimization of stochastic complexity and cumulative classification.

scientific article

New tetrodotoxin analogs in Brazilian pufferfishes tissues and microbiome

scientific article published on 30 October 2019

Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review

scientific article published on 16 June 2015

Occurrence of Harmful Cyanobacteria in Drinking Water from a Severely Drought-Impacted Semi-arid Region.

scientific article

Oenococcus alcoholitolerans sp. nov., a lactic acid bacteria isolated from cachaça and ethanol fermentation processes

scientific article (publication date: 15 October 2014)

Oil leakage induces changes in microbiomes of deep-sea sediments of Campos Basin (Brazil)

scientific article published on 21 May 2020

Opinion: Re-evaluating prokaryotic species

scientific article

Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.

scientific article published on 28 November 2017

Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii

scientific article

Perspectives on the Great Amazon Reef: Extension, Biodiversity, and Threats

Photobacterium jeanii sp. nov., isolated from corals and zoanthids

scientific article

Photobacterium kishitanii sp. nov., a luminous marine bacterium symbiotic with deep-sea fishes

scientific article

Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

scientific article

Photobacterium swingsii sp. nov., isolated from marine organisms

scientific article

Phylogenetic analysis of vibrios and related species by means of atpA gene sequences

scientific article

Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO3 bed in the South Atlantic Ocean.

scientific article

Polyketide synthase gene diversity within the microbiome of the sponge Arenosclera brasiliensis, endemic to the Southern Atlantic Ocean.

scientific article published on 28 December 2012

Potential metabolic strategies of widely distributed holobionts in the oceanic archipelago of St Peter and St Paul (Brazil).

scientific article published on 9 April 2015

Quantitative Detection of Active Vibrios Associated with White Plague Disease in Mussismilia braziliensis Corals

scientific article published on 17 November 2017

Quorum sensing signal production and inhibition by coral-associated vibrios

scientific article published on 05 January 2010

Rapid screening of marine bacterial symbionts using MALDI-TOF MS

scientific article published on 11 June 2020

Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov.

scientific article

Remote sensing, isotopic composition and metagenomics analyses revealed Doce River ore plume reached the southern Abrolhos Bank Reefs

scientific article published on 29 August 2019

Repeated selective enrichment process of sediment microbiota occurred in sea cucumber guts

scientific article published on 02 October 2019

Rhodolith beds are major CaCO3 bio-factories in the tropical South West Atlantic

scientific article

Rhodoliths holobionts in a changing ocean: host-microbes interactions mediate coralline algae resilience under ocean acidification

scientific article published on 24 September 2018

Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.

scientific article

Severe impacts of the Brumadinho dam failure (Minas Gerais, Brazil) on the water quality of the Paraopeba River

scientific article published on 05 December 2019

Sinkhole-like structures as bioproductivity hotspots in the Abrolhos Bank

scholarly article by Giselle S. Cavalcanti published in November 2013

Sliding window discretization: a new method for multiple band matching of bacterial genotyping fingerprints.

scientific article published in November 2004

Sneathiella chinensis gen. nov., sp. nov., a novel marine alphaproteobacterium isolated from coastal sediment in Qingdao, China.

scientific article

Structuring of bacterioplankton diversity in a large tropical bay

scientific article

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil).

scientific article

Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis

scientific article

Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan.

scientific article published on 16 June 2017

The Deep-Sea Microbial Community from the Amazonian Basin Associated with Oil Degradation

scientific article published on 13 June 2017

The Famlily Vibrionaceae

The First Temporal and Spatial Assessment of Vibrio Diversity of the Surrounding Seawater of Coral Reefs in Ishigaki, Japan

scientific article

The clinically approved antiviral drug sofosbuvir impairs Brazilian zika virus replication

scientific article

The clinically approved antiviral drug sofosbuvir inhibits Zika virus replication

scientific article

The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion

scientific article

Towards a genome based taxonomy of Mycoplasmas

scientific article published on 5 August 2011

Traffic of secondary metabolites to cell surface in the red alga Laurencia dendroidea depends on a two-step transport by the cytoskeleton

scientific article

Transcriptomic analysis of clam extrapallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development

scientific article published on 13 August 2019

Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome

scientific article

Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil

scientific article

Unlocking Marine Biotechnology in the Developing World

scientific article

Unlocking the Genomic Taxonomy of the Prochlorococcus Collective

scientific article published on 28 May 2020

Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov.

scientific article

Use of a marine microbial community as inoculum for biomethane production

scientific article published on 31 July 2015

Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios

scientific article

Vibrio alfacsensis sp. nov., isolated from marine organisms

scientific article

Vibrio communis sp. nov., isolated from the marine animals Mussismilia hispida, Phyllogorgia dilatata, Palythoa caribaeorum, Palythoa variabilis and Litopenaeus vannamei

scientific article

Vibrio gallicus sp. nov., isolated from the gut of the French abalone Haliotis tuberculata

scientific article

Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.

scientific article

Vibrio jasicida sp. nov., a member of the Harveyi clade, isolated from marine animals (packhorse lobster, abalone and Atlantic salmon).

scientific article

Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

scientific article

Vibrio neonatus sp. nov. and Vibrio ezurae sp. nov. isolated from the gut of Japanese abalones.

scientific article

Vibrio superstes sp. nov., isolated from the gut of Australian abalones Haliotis laevigata and Haliotis rubra.

scientific article

Vibrio taketomensis sp. nov. by genome taxonomy

scientific article published on 10 December 2019

Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs.

scientific article published on 19 February 2018

Vibrio tetraodonis sp. nov.: genomic insights on the secondary metabolites repertoire

scientific article published on 25 August 2020

Vibrio trachuri Iwamoto et al. 1995 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981

scientific article published on May 2002

Vibrio variabilis sp. nov. and Vibrio maritimus sp. nov., isolated from Palythoa caribaeorum

scientific article

Vibrio2005: the First International Conference on the Biology of Vibrios

scientific article

Vibrio2009: the third international conference on the biology of Vibrios.

scientific article published in September 2010

Vibrios dominate as culturable nitrogen-fixing bacteria of the Brazilian coral Mussismilia hispida

scientific article published on 03 August 2008

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon.

scientific article published on September 2017

Virioplankton dynamics are related to eutrophication levels in a tropical urbanized bay.

scientific article

Zooplankton From a Reef System Under the Influence of the Amazon River Plume

scientific article published in March 2018

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