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List of works by Jeffrey L. Bennetzen

5Gs for crop genetic improvement

scientific article published on 28 January 2020

A GeneTrek analysis of the maize genome

scholarly article

A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia affinis Using a Chicago Library. ⬇️

scientific article published on 31 May 2018

A Plant Genome Initiative

article

A Plant Genome Initiative

scientific article published in April 1998

A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes ⬇️

scientific article published on October 6, 2003

A unified classification system for eukaryotic transposable elements

scientific article (publication date: December 2007)

A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium

scientific article

Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA

scientific article published on 01 August 1994

Adaptive evolution of signaling partners

scientific article

Allele-specific and Mutator-associated instability at the Rpl disease-resistance locus of maize

scientific article published in Nature

An examination of targeted gene neighborhoods in strawberry.

scientific article

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

scientific article published on 12 April 2004

Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat

scientific article published on 15 December 2005

Analysis of retrotransposon abundance, diversity and distribution in holocentric Eleocharis (Cyperaceae) genomes

scientific article published on 01 August 2018

Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

scholarly article

Analysis of the chromosomal distribution of transposon-carrying T-DNAs in tomato using the inverse polymerase chain reaction.

scientific article published in March 1994

Approaches and Progress in the Molecular Cloning of Plant Disease Resistance Genes

scientific article published in 1992

Arabidopsis arrives

scientific article published on 01 January 2001

Assessment of genome origins and genetic diversity in the genusEleusinewith DNA markers ⬇️

scientific article published on August 1, 1995

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

Biology and the beasts: individual investigator-driven research in the megaprojects era

scientific article published on 08 December 2008

Birth and Death of LTR-Retrotransposons in Aegilops tauschii

scientific article published on 29 August 2018

Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses

scientific article

Cell-autonomous recognition of the rust pathogen determines rp1-specified resistance in maize

scientific article

Centromere retention and loss during the descent of maize from a tetraploid ancestor

scientific article

Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes

scientific article

Characterization of four dispersed repetitive DNA sequences from Zea mays and their use in constructing contiguous DNA fragments using YAC clones

scientific article published on 01 August 1996

Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis)

scientific article published on 20 August 2018

Climate change and the integrity of science

scientific article

Close split of sorghum and maize genome progenitors

scientific article published on October 2004

Codon selection in yeast

scientific article

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

scientific article

Comparative Sequence Analysis of Plant Nuclear Genomes: Microcolinearity and Its Many Exceptions

scientific article published in July 2000

Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana.

scientific article published on 27 June 2018

Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes

scholarly article

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

scientific article published in March 2001

Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptions

scientific article

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex

scientific article published in December 2002

Comparative transcriptomic analysis reveals gene expression associated with cold adaptation in the tea plant Camellia sinensis

scientific article published on 31 July 2019

Complex duplications in maize lines

scientific article published on 01 May 1993

Consistent over-estimation of gene number in complex plant genomes.

scientific article published in December 2004

Construction and Homologous Expression of a Maize Adh1 Based NcoI Cassette Vector

scientific article published on 01 October 1987

Current status and prospects for the study of Nicotiana genomics, genetics, and nicotine biosynthesis genes

scientific article published on 13 January 2015

DNA class organization on maize Adh1 yeast artificial chromosomes

scientific article published on February 1994

DNA insertion in the first intron of maize Adh1 affects message levels: cloning of progenitor and mutant Adh1 alleles

scientific article

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes

scientific article

DNA structures associated with autonomously replicating sequences from plants

scientific article published on 01 May 1989

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera) ⬇️

scientific article published on May 29, 2011

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance

scientific article published on 22 December 2017

Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae).

scientific article published on 04 August 2016

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes

scientific article (publication date: November 2002)

Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

scientific article

Discovery and characterization of tannase genes in plants: roles in hydrolysis of tannins

scientific article published on 15 February 2020

Discovery of Lineage-Specific Genome Change in Rice Through Analysis of Resequencing Data

scientific article published on 19 April 2018

Distinguishing friends, foes, and freeloaders in giant genomes

scientific article published on 12 March 2018

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

scientific article

Divergent perspectives on GM food

scientific article published on 01 December 2002

Do Plants Have a One-Way Ticket to Genomic Obesity?

article

Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

scientific article published on 29 September 2009

Draft Genome Sequence of a Serratia marcescens Strain Isolated from the Pitcher Fluids of a Sarracenia Pitcher Plant

scientific article published on 09 January 2020

Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality.

scientific article

Dynamic Gene Copy Number Variation in Collinear Regions of Grass Genomes ⬇️

scientific article published on October 14, 2011

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

scientific article

Enchilada redux: how complete is your genome sequence?

scientific article published on 01 July 2008

Enrichment of gene-coding sequences in maize by genome filtration

scientific article

Epigenetics of the epigenome

scientific article published on 12 April 2011

Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

scholarly article published in Nature Biotechnology

Evolutionary history and positional shift of a rice centromere

scientific article

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

scientific article

Exceptional haplotype variation in maize

scientific article

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff

scientific article published on 14 February 2020

Faculty Opinions recommendation of Comparative analysis of the receptor-like kinase family in Arabidopsis and rice

scientific article published on 8 July 2004

Faculty Opinions recommendation of Comparative sequencing of plant genomes: choices to make

scientific article published on 14 July 2006

Faculty Opinions recommendation of Jasmonate and salicylate induce expression of herbivore cytochrome P450 genes

scientific article published on 7 November 2002

Faculty Opinions recommendation of PMR6, a pectate lyase-like gene required for powdery mildew susceptibility in Arabidopsis

scientific article published on 7 November 2002

Faculty Opinions recommendation of Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium

scientific article published on 20 June 2008

Faculty Opinions recommendation of Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light

scientific article published on 27 December 2007

Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin

scientific article published on 14 March 2007

Fine-Mapping and Identification of a Candidate Gene Underlying thed2Dwarfing Phenotype in Pearl Millet,Cenchrus americanus(L.) Morrone ⬇️

scientific article published on March 1, 2013

Foxtail millet: a sequence-driven grass model system

article

Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis

scientific article published on January 2002

Functional Genomics in Plants

scientific article published on 22 March 2002

G protein activation without a GEF in the plant kingdom

scientific article

Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries

scientific article published in October 2005

Gene identification in a complex chromosomal continuum by local genomic cross-referencing.

scientific article published in December 1996

Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae

scientific article published on 6 February 2018

Gene loss and movement in the maize genome

scientific article published on October 2004

Generation of a genetic map for Sorghum bicolor

scientific article published in 1994

Genetic Engineering for Improved Crop Disease Resistance

scientific article published in 1984

Genetic diversity of Eritrean sorghum landraces assessed with simple sequence repeat (SSR) markers

scientific article published in August 2002

Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes

scientific article

Genome Relationships

scientific article published in 2001

Genome Relationships: Maize and the Grass Model

scientific article published in 2001

Genome Sequence Analysis of Enterobacter sp. C6, Found in the Pitcher Fluids of Sarracenia rosea

scientific article published on 16 January 2020

Genome sequence of Malania oleifera, a tree with great value for nervonic acid production

scientific article published on 01 February 2019

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

scientific article

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

scientific article published on July 2002

Genome studies and molecular evolution. Commonalities, contrasts, continuity and change in plant genomes

scientific article published on 01 April 1998

Genomic Colinearity as a Tool for Plant Gene Isolation

scientific article published on 01 January 2003

Genomic organization of the ribosomal DNA of sorghum and its close relatives

scientific article published on 01 June 1989

Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives

scientific article

Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley

article

Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster.

scientific article

Grass Genomic Synteny Illuminates Plant Genome Function and Evolution

scientific article published on 12 November 2008

Grass genome structure and evolution

scientific article

Grass genomes

scientific article

Grasses as a single genetic system: genome composition, collinearity and compatibility

scientific article

Haplotype Analysis and Linkage Disequilibrium at Five Loci inEragrostis tef ⬇️

scientific article (publication date: March 2012)

High-Throughput Discovery of Mutations in Tef Semi-Dwarfing Genes by Next-Generation Sequencing Analysis ⬇️

scientific article published on August 17, 2012

High‐Cot sequence analysis of the maize genome ⬇️

scientific article (publication date: April 2003)

Homologous recombination between plasmid DNA molecules in maize protoplasts ⬇️

scientific article published on November 1, 1991

Identification of a pathogenicity locus, rpfA, in Erwinia carotovora subsp. carotovora subsp. carotovora that encodes a two-component sensor-regulator protein

scientific article published on April 1997

Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings

scientific article published on 28 November 2006

In vitro transcription of the yeast alcohol dehydrogenase I gene by homologous RNA polymerase B (II). Selective initiation and discontinuous elongation on a supercoiled template ⬇️

scientific article published on November 10, 1981

Integrating transcriptome and microRNA analysis identifies genes and microRNAs for AHO-induced systemic acquired resistance in N. tabacum

scientific article published on 2 October 2017

Integration and Nonrandom Mutation of a Plasma Membrane Proton ATPase Gene Fragment within the Bs1 Retroelement of Maize

scientific article published in August 1994

Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize

scientific article published in August 1994

Isolation and bioinformatic analysis of a novel transposable element, ISCbe4, from the hyperthermophilic bacterium, Caldicellulosiruptor bescii

scientific article published in October 2013

Isolation and characterization of genomic and transcribed retrotransposon sequences from sorghum

scientific article published on 4 February 2004

Isolation and diversity analysis of resistance gene homologues from switchgrass

scientific article

Isolation of matrices from maize leaf nuclei: identification of a matrix-binding site adjacent to the Adh1 gene

scientific article published on September 1993

Isolation of the structural gene for alcohol dehydrogenase by genetic complementation in yeast

scientific article

LTR Retrotransposon Dynamics and Specificity in Setaria italica

scientific article published on 20 December 2016

Lateral transfers of large DNA fragments spread functional genes among grasses

article

Maize Genome Structure and Evolution

Maize Transposable Element Dynamics

scientific article published in 2018

Matrix Attachment Regions and Transcribed Sequences within a Long Chromosomal Continuum Containing Maize Adh1

scientific article published in October 1995

Matrix attachment regions and structural colinearity in the genomes of two grass species.

scientific article

Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1.

scientific article published in October 1995

Mechanisms and rates of genome expansion and contraction in flowering plants

scientific article published in May 2002

Mechanisms of recent genome size variation in flowering plants

scientific article

Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains

scientific article

Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays

scientific article

Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes

scientific article

Molecular analysis of multiple mutator-derived alleles of the bronze locus of maize.

scientific article published on June 1989

Molecular analysis of the alcohol dehydrogenase (Adhl) gene of maize ⬇️

scientific article published on May 11, 1984

Mu1-related transposable elements of maize preferentially insert into low copy number DNA ⬇️

scientific article published on May 1, 1995

Multiple reference genome sequences of hot pepper reveal the massive evolution of plant disease resistance genes by retroduplication

Mutator Transposable Elements That Occur in Clusters in the Maize Genome

scientific article published in March 1992

National Science Foundation-sponsored workshop report. Maize genome sequencing project

scientific article

Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair

scientific article

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

scientific article published on 24 November 2008

Nested retrotransposons in the intergenic regions of the maize genome

scientific article

New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication.

scientific article published in November 2017

New rust resistance specificities associated with recombination in the Rp1 complex in maize.

scientific article published on September 1995

Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice (Oryza sativa L. subsp. indica cv. Nagina 22).

scientific article

Nucleotide sequence of the maize transposable element Mul.

scientific article published on August 1984

Nucleotide sequence of the maize transposable elementMul

scientific article published in 1984

Numerous small rearrangements of gene content, order and orientation differentiate grass genomes.

scientific article

On the tetraploid origin of the maize genome

scientific article

Organization, instability and evolution of plant disease resistance genes

scientific article published on November 1, 1992

Pathogen corruption and site-directed recombination at a plant disease resistance gene cluster

scientific article

Patterns in grass genome evolution

scientific article published on 8 February 2007

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

scientific article

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2010 - 31 May 2010.

scientific article published in November 2010

Permanent genetic resources added to molecular ecology resources database 1 October 2012-30 November 2012.

scientific article published on 25 January 2013

Phoenix phylogeny, and analysis of genetic variation in a diverse collection of date palm (Phoenix dactylifera) and related species

scientific article published on 18 December 2018

Plant Genetics for Study of the Roles of Root Exudates and Microbes in the Soil

scientific article published on 15 September 2010

Plant Synteny, Colinearity and Genome Evolution

scientific article published on 25 July 2001

Plant centromere organization: a dynamic structure with conserved functions

scientific article published on February 2007

Plant genomics takes root, branches out.

scientific article

Plant retrotransposons

scientific article

Promoter mutations of an essential gene for pollen development result in disease resistance in rice

scientific article

Rapid diversification of five Oryza AA genomes associated with rice adaptation

scientific article

Rapid recent growth and divergence of rice nuclear genomes

scholarly article

Recombination at the Rp1 locus of maize

scientific article published on 01 May 1991

Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice

scientific article

Recurrent loss of specific introns during angiosperm evolution

scientific article

Reference genome sequence of the model plant Setaria

scientific article

Regional and racial specificities in sorghum germplasm assessed with DNA markers

scientific article published on 01 June 1996

Regulatory mutants of the maize Adh1 gene caused by DNA insertions

scientific article published in Nature

Relationships Between Gene Structure and Genome Instability in Flowering Plants

scientific article published on 17 February 2018

Reply

scientific article published on 01 November 1997

Retrotransposons: central players in the structure, evolution and function of plant genomes

scientific article published on 01 December 2000

Selection and characterization of cadmium-resistant suspension cultures of the wild tomato Lycopersicon peruvianum

scientific article

Sequence Organization and Conservation in sh2/a1-Homologous Regions of Sorghum and Rice ⬇️

scientific article published on January 1, 1998

Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus

scientific article published on 28 May 2008

Sequence composition and organization in the Sh2/A1-homologous region of rice

scientific article published in December 1996

Single-stranded DNA transcription by yeast RNA polymerase B ⬇️

scientific article published on December 28, 1981

Slow but Steady: Reduction of Genome Size through Biased Mutation [with Reply]

scientific article published in November 1997

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza

scientific article

Species-Associated Differences in the Below-Ground Microbiomes of Wild and Domesticated

scientific article published on 21 August 2018

Structural Domains and Matrix Attachment Regions along Colinear Chromosomal Segments of Maize and Sorghum

scientific article published in 2000

Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement.

scientific article published in December 2002

Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum.

scientific article published on February 2000

Structure and coding properties of Bs1, a maize retrovirus-like transposon

scientific article

Structure and evolution of the Cinful retrotransposon family of maize

scientific article published in October 2003

Structure and evolution of the genomes ofsorghum bicolor andZea mays

scientific article published on 01 June 1993

Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum

scientific article

Structure-based discovery and description of plant and animal Helitrons

scientific article

Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation ⬇️

scientific article published on July 11, 2011

THE STRAWBERRY GENOME IS COMING INTO VIEW

scientific article published in August 2009

Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity

scientific article published on January 2001

Targeting xa13, a recessive gene for bacterial blight resistance in rice

scientific article

Teff, an Orphan Cereal in the Chloridoideae, Provides Insights into the Evolution of Storage Proteins in Grasses

scientific article published on 13 May 2016

The B73 Maize Genome: Complexity, Diversity, and Dynamics

scientific article

The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes

scientific article published on 19 June 2009

The Future of Maize

The Genomes of All Angiosperms: A Call for a Coordinated Global Census

article published in 2011

The Grasses as a Single Genetic System

scientific article published in 1999

The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes.

scientific article published in January 1996

The Mutator transposable element system of maize

scientific article published on January 1996

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

scientific article

The Rp3 disease resistance gene of maize: mapping and characterization of introgressed alleles

scientific article published in July 1995

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article

The State of DNA Modification within and Flanking Maize Transposable Elements

scientific article published in 1988

The TIGR Maize Database

scientific article

The Use of Comparative Genome Mapping in the Identification, Cloning and Manipulation of Important Plant Genes

scientific article published in 1996

The bracteatus pineapple genome and domestication of clonally propagated crops

scientific article published on 30 September 2019

The contributions of retroelements to plant genome organization, function and evolution

scientific article published on September 1996

The contributions of transposable elements to the structure, function, and evolution of plant genomes

scientific article published on 21 February 2014

The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

scientific article

The evolution of grass genome organisation and function

scientific article published on 01 January 1998

The evolution of nuclear genome structure in seed plants

article

The generation of Mutator transposable element subfamilies in maize

scientific article published on 01 January 1994

The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis

scientific article

The genetic map of finger millet, Eleusine coracana

scientific article published on 14 November 2006

The genome of the pear (Pyrus bretschneideri Rehd.).

scientific article

The genome of woodland strawberry (Fragaria vesca)

scientific article

The hardy rubber tree genome provides insights into the evolution of polyisoprene biosynthesis.

scientific article published on 8 December 2017

The maize genome as a model for efficient sequence analysis of large plant genomes

scientific article

The many hues of plant heterochromatin

scientific article

The paleontology of intergene retrotransposons of maize ⬇️

scientific article published on September 1, 1998

The pineapple genome and the evolution of CAM photosynthesis

scientific article published on 2 November 2015

The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase ⬇️

scientific article published on March 25, 1982

The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences

scientific article

The rice genome. Opening the door to comparative plant biology

scientific article

The structure and evolution of angiosperm nuclear genomes

scientific article

The tea plant reference genome and improved gene annotation using long-read and paired-end sequencing data

scientific article published on 15 July 2019

The unified grass genome: synergy in synteny

scientific article published on April 1997

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization

scientific article

The y1 gene of maize codes for phytoene synthase.

scientific article

Transposable element Mu1 is found in multiple copies only in Robertson's Mutator maize lines

scientific article published on 01 January 1984

Transposable element contributions to plant gene and genome evolution

scientific article published in 2000

Transposable element contributions to plant gene and genome evolution

scientific article

Transposable element origins of epigenetic gene regulation ⬇️

scientific article published on 04 April 2011

Transposable elements, gene creation and genome rearrangement in flowering plants

scientific article

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m)

scientific article published on 12 April 2002

Unequal exchange and meiotic instability of disease-resistance genes in the Rp1 region of maize.

scientific article

Uneven chromosome contraction and expansion in the maize genome.

scientific article

Unlocking plant genetics with telomere-to-telomere genome assemblies

scientific article published on 24 July 2024

Variation in allelic expression associated with a recombination hotspot in Zea mays

scientific article

Whole plastome sequences from five ginger species facilitate marker development and define limits to barcode methodology

scientific article

Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes

scientific article published on 25 July 2013

Zea

scientific article published in 2011

[Construction of genetic map in sorghum and fine mapping of the germination stimulant production gene response to Striga asiatica]

scientific article published on 01 January 2001

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