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List of works by Jordan Douglas

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The Kinetics of RNA Polymerase: Visualisation, Simulation, and Inference

2020 doctoral thesis by Jordan Douglas at University of Auckland
Evolution is coupled with branching across many granularities of life

Genomic epidemiology of circulating SARS-CoV-2 variants during first two years of the pandemic in Colombia

Genomic epidemiology of circulating SARS-CoV-2 variants during first two years of the pandemic in Colombia

Bayesian inference and comparison of stochastic transcription elongation models

StarBeast3: Adaptive Parallelised Bayesian Inference of the Multispecies Coalescent

Coexisting bacterial aminoacyl‐tRNAsynthetase paralogs exhibit distinct phylogenetic backgrounds and functional compatibility withEscherichia coli

scientific article published on 17 October 2024
Reduced amino acid substitution matrices find traces of ancient coding alphabets in modern day proteins

scientific article published on 11 August 2025
Evolution and structural diversity of the MotAB stator: insights into the origins of bacterial flagellar motility

scientific article published on 8 October 2025
Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone

Real-time genomics to track COVID-19 post-elimination border incursions in Aotearoa New Zealand

Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene

Protein Structural Phylogenetics

scientific article published on 30 July 2025
Approximate Bayesian computation of transcriptional pausing mechanisms

Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand

scientific article published on 12 July 2022
Bayesian inference and comparison of stochastic transcription elongation models

scientific article published on 14 February 2020
Reduced amino acid substitution matrices find traces of ancient coding alphabets in modern day proteins

Mechanistic and evolutionary insights into a family of aminoacyl-tRNA deacylases that protects against canavanine toxicity

scientific article published on 5 September 2025
Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border

Quantitatively defining species boundaries with more efficiency and more biological realism

scientific article published in 2022
A decade of genomic surveillance tracks the disappearance and reintroduction of seasonal influenza virus in Aotearoa New Zealand

Spatial and temporal transmission dynamics of respiratory syncytial virus in New Zealand before and after the COVID-19 pandemic

scientific article published on 11 November 2024
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations

Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model

scientific article published on 2 February 2021
WITHDRAWN: Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of Biology

Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia

scientific article published on 13 July 2023
Evolution is coupled with branching across many granularities of life

scientific article published in May 2025
StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies Coalescent

scientific article published on 17 February 2022
Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene

scientific article published in January 2021
Enzymic recognition of amino acids drove the evolution of primordial genetic codes

scientific article published on 4 December 2023
Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of Biology

scientific article published on 6 June 2025
Quantitatively defining species boundaries with more efficiency and more biological realism

A genomic database furnishes minimal functional glycyl-tRNA synthetases homologous to other, designed class II urzymes

scientific article published on 4 November 2024
Primordial aminoacyl-tRNA synthetases preferred minihelices to full-length tRNA

scientific article published on 23 May 2024
Domain acquisition by class I aminoacyl-tRNA synthetase urzymes coordinated the catalytic functions of HVGH and KMSKS motifs

scientific article published on 20 July 2023
HetMM: A Michaelis-Menten model for non-homogeneous enzyme mixtures

Adaptive dating and fast proposals: revisiting the phylogenetic relaxed clock model

Aminoacyl-tRNA synthetase urzymes optimized by deep learning behave as a quasispecies

scientific article published in March 2025
Molecular and structural innovations of the stator motor complex at the dawn of flagellar motility

Enzymic recognition of amino acids drove the evolution of primordial genetic codes

AARS Online: a collaborative database on the structure, function, and evolution of the aminoacyl-tRNA synthetases

AARS Online: A collaborative database on the structure, function, and evolution of the aminoacyl‐tRNA synthetases

scientific article published on 9 September 2024

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