List of works - Marcel M M Kuypers

15N-Labeling Experiments to Dissect the Contributions of Heterotrophic Denitrification and Anammox to Nitrogen Removal in the OMZ Waters of the Ocean

scientific article published on 01 January 2011

A laboratory model of marine snow: Preparation and characterization of porous fiber particles

scholarly article by Anna L. Dörgens et al published 4 September 2015 in Limnology and Oceanography: Methods

A large and abrupt fall in atmospheric CO2 concentration during Cretaceous times

scientific article published in Nature

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

scientific article

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

scholarly article

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

scientific article

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

scientific article

Aerobic and anaerobic methanotrophs in the Black Sea water column

scientific article published on October 2006

Aerobic denitrification in permeable Wadden Sea sediments

scientific article published on 10 December 2009

Aerobic denitrification in permeable Wadden Sea sediments.

scientific article published on 22 March 2011

An intracellular silver deposition method for targeted detection and chemical analysis of uncultured microorganisms

scientific article published on 27 April 2020

Anaerobic ammonium oxidation by anammox bacteria in the Black Sea.

scientific article

Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika).

scientific article

Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world

scientific article published on 08 October 2019

Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity

scientific article

Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps

scientific article

Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium

scientific article

Aquatic respiration rate measurements at low oxygen concentrations

scientific article

Archaeal remains dominate marine organic matter from the early Albian oceanic anoxic event 1b

article

Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru

scientific article published on 27 November 2019

Benthic nitrogen loss in the arabian sea off pakistan

scientific article

Biomarkers for in situ detection of anaerobic ammonium-oxidizing (anammox) bacteria

scientific article

Black shale deposition on the northwest African Shelf during the Cenomanian/Turonian oceanic anoxic event: Climate coupling and global organic carbon burial

article

Bloom of a denitrifying methanotroph, 'Candidatus Methylomirabilis limnetica', in a deep stratified lake

scientific article published on 01 July 2018

Carbon and nitrogen fluxes associated with the cyanobacterium Aphanizomenon sp. in the Baltic Sea

scientific article published on 29 April 2010

Carbon isotope equilibration during sulphate-limited anaerobic oxidation of methane

Carbon, nitrogen and O(2) fluxes associated with the cyanobacterium Nodularia spumigena in the Baltic Sea. ⬇️

scientific article published on 10 March 2011

Cell-to-cell variation and specialization in sugar metabolism in clonal bacterial populations.

scientific article published on 18 December 2017

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

article

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland).

scientific article

Complex nitrogen cycling in the sponge Geodia barretti

scientific article

Correction: The rate and fate of N2 and C fixation by marine diatom-diazotroph symbioses

scientific article published on 30 November 2021

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment

scientific article published on 10 December 2018

Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf

scientific article (publication date: 5 November 2013)

Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters

scientific article published on 04 March 2019

Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously.

scientific article published on 2 May 2017

Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

scientific article published on 26 September 2011

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

scientific article published on 10 December 2008

Direct Cell Mass Measurements Expand the Role of Small Microorganisms in Nature

scientific article published on 01 July 2019

Distribution of a consortium between unicellular algae and the N2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean

scientific article

Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico.

scientific article published in June 2007

Doubling of marine dinitrogen-fixation rates based on direct measurements

scientific article published on August 2012

Enhanced Nitrogen Loss by Eddy-Induced Vertical Transport in the Offshore Peruvian Oxygen Minimum Zone.

scientific article

Enhanced productivity led to increased organic carbon burial in the euxinic North Atlantic basin during the late Cenomanian oceanic anoxic event

Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria

scientific article

Epifluorescence, SEM, TEM and nanoSIMS image analysis of the cold phenotype of Clostridium psychrophilum at subzero temperatures

scientific article published on 4 November 2014

Evidence of nitrification and denitrification in high and low microbial abundance sponges

scientific article

Extensive nitrogen loss from permeable sediments off North-West Africa

Extremely high sea-surface temperatures at low latitudes during the middle Cretaceous as revealed by archaeal membrane lipids

scholarly article

Facets of diazotrophy in the oxygen minimum zone waters off Peru

scientific article

GeneFISH--an in situ technique for linking gene presence and cell identity in environmental microorganisms

scientific article

Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy

scientific article

HISH-SIMS analysis of bacterial uptake of algal-derived carbon in the Río de la Plata estuary.

scientific article published on 29 September 2012

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre

scientific article

High cell-specific rates of nitrogen and carbon fixation by the cyanobacterium Aphanizomenon sp. at low temperatures in the Baltic Sea.

scientific article published on 27 October 2015

High rates of microbial dinitrogen fixation and sulfate reduction associated with the Mediterranean seagrass Posidonia oceanica.

scientific article published on 31 August 2016

Impact of temperature on ladderane lipid distribution in anammox bacteria

scientific article (publication date: March 2010)

In situ identification and N₂ and C fixation rates of uncultivated cyanobacteria populations

scientific article published on 27 March 2013

Inorganic carbon fixation by sulfate-reducing bacteria in the Black Sea water column

scientific article published in December 2007

Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea

Intensive cryptic microbial iron cycling in the low iron water column of the meromictic Lake Cadagno

scientific article

Iron isotope and trace metal records of iron cycling in the proto-North Atlantic during the Cenomanian-Turonian oceanic anoxic event (OAE-2)

Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway).

scientific article

Light-Dependent Aerobic Methane Oxidation Reduces Methane Emissions from Seasonally Stratified Lakes

scientific article

Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea

scientific article (publication date: 24 April 2007)

Look@NanoSIMS--a tool for the analysis of nanoSIMS data in environmental microbiology

scientific article

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation

scientific article

Measuring carbon and N2 fixation in field populations of colonial and free-living unicellular cyanobacteria using nanometer-scale secondary ion mass spectrometry(1).

scientific article

Mechanisms of transient nitric oxide and nitrous oxide production in a complex biofilm.

scientific article published on 11 June 2009

Metabolic specialization of denitrifiers in permeable sediments controls N 2 O emissions

scientific article published on 16 October 2018

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

scientific article

Methane oxidation coupled to oxygenic photosynthesis in anoxic waters

scientific article

Methane stimulates massive nitrogen loss from freshwater reservoirs in India.

scientific article published on 28 March 2018

Microbial Pathways for Nitrogen Loss in an Upland Soil.

scientific article published on 12 March 2018

Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system

scientific article published on 07 September 2006

Microbial nitrogen cycling processes in oxygen minimum zones.

scientific article published on January 2011

N2 fixation in free-floating filaments of Trichodesmium is higher than in transiently suboxic colony microenvironments

scientific article published on 29 December 2018

N2-fixation, ammonium release and N-transfer to the microbial and classical food web within a plankton community

scientific article published on 11 August 2015

N2-fixing cyanobacteria supplied nutrient N for Cretaceous oceanic anoxic events

scholarly article

Niche partitioning by photosynthetic plankton as a driver of CO<sub>2</sub>-fixation across the oligotrophic South Pacific Subtropical Ocean

scientific article published on 19 August 2021

Nitrite oxidation in the Namibian oxygen minimum zone

scientific article

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

scientific article

Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone

article

Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses.

scientific article

Nitrogen isotope effects induced by anammox bacteria

scientific article

Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats

scientific article published on 11 March 2010

Nutrients that limit growth in the ocean

scientific article published in June 2017

Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria.

scientific article

Oxygen sensitivity of anammox and coupled N-cycle processes in oxygen minimum zones

scientific article

Phenotypic heterogeneity driven by nutrient limitation promotes growth in fluctuating environments

scientific article published on 9 May 2016

Phosphate availability affects fixed nitrogen transfer from diazotrophs to their epibionts

scientific article published on 27 June 2019

Polysulfides as intermediates in the oxidation of sulfide to sulfate by Beggiatoa spp

scientific article published on 8 November 2013

Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system

scientific article

Purple sulfur bacteria fix N<sub>2</sub> via molybdenum-nitrogenase in a low molybdenum Proterozoic ocean analogue

scientific article published on 06 August 2021

Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids

scientific article

Quantification of archaea-driven freshwater nitrification from single cell to ecosystem levels

scientific article published in 2022

Rapid microbial diversification of dissolved organic matter in oceanic surface waters leads to carbon sequestration

scientific article published on 03 August 2020

Resolution of Conflicting Signals at the Single-Cell Level in the Regulation of Cyanobacterial Photosynthesis and Nitrogen Fixation

scientific article

Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa.

scientific article

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

scientific article

Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean

scientific article published on 9 May 2024

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

scientific article published on 07 February 2020

Single-cell imaging of phosphorus uptake shows that key harmful algae rely on different phosphorus sources for growth

scientific article published in Scientific Reports

Size and Carbon Content of Sub-seafloor Microbial Cells at Landsort Deep, Baltic Sea.

scientific article published on 31 August 2016

Small sinking particles control anammox rates in the Peruvian oxygen minimum zone

scientific article published on 28 May 2021

Stable carbon isotopic fractionations associated with inorganic carbon fixation by anaerobic ammonium-oxidizing bacteria

scientific article

Substantial (13) C/(12) C and D/H fractionation during anaerobic oxidation of methane by marine consortia enriched in vitro.

scientific article published on 23 September 2009

Sulfur isotopes track the global extent and dynamics of euxinia during Cretaceous Oceanic Anoxic Event 2.

scientific article published on 29 October 2013

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments.

scientific article published on 22 September 2014

The carbon isotopic response of algae, (cyano)bacteria, archaea and higher plants to the late Cenomanian perturbation of the global carbon cycle: Insights from biomarkers in black shales from the Cape Verde Basin (DSDP Site 367)

article

The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis.

scientific article published on 23 December 2014

The effect of sediment grain properties and porewater flow on microbial abundance and respiration in permeable sediments

scientific article published on 27 February 2020

The fate of nitrate in intertidal permeable sediments

scientific article

The future of single-cell environmental microbiology

scientific article published on January 2007

The impact of bedform migration on benthic oxygen fluxes

The lycopane/C31 n-alkane ratio as a proxy to assess palaeoxicity during sediment deposition

scientific article

The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium

scientific article

The microbial nitrogen-cycling network

scientific article published on 5 February 2018

The rate and fate of N and C fixation by marine diatom-diazotroph symbioses

scientific article published in February 2022

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle

scientific article

Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga

scientific article

Untangling hidden nutrient dynamics: rapid ammonium cycling and single-cell ammonium assimilation in marine plankton communities

scientific article published on 25 March 2019

Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments

scientific article published on 27 May 2015

Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany).

scientific article published on 28 August 2009

Zero-valent sulphur is a key intermediate in marine methane oxidation

scientific article published in Nature

List of works by Marcel M M Kuypers

15N-Labeling Experiments to Dissect the Contributions of Heterotrophic Denitrification and Anammox to Nitrogen Removal in the OMZ Waters of the Ocean

A laboratory model of marine snow: Preparation and characterization of porous fiber particles

A large and abrupt fall in atmospheric CO2 concentration during Cretaceous times

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

Aerobic and anaerobic methanotrophs in the Black Sea water column

Aerobic denitrification in permeable Wadden Sea sediments

Aerobic denitrification in permeable Wadden Sea sediments.

An intracellular silver deposition method for targeted detection and chemical analysis of uncultured microorganisms

Anaerobic ammonium oxidation by anammox bacteria in the Black Sea.

Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika).

Anaerobic ammonium oxidation is a major N-sink in aquifer systems around the world

Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity

Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps

Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium

Aquatic respiration rate measurements at low oxygen concentrations

Archaeal remains dominate marine organic matter from the early Albian oceanic anoxic event 1b

Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru

Benthic nitrogen loss in the arabian sea off pakistan

Biomarkers for in situ detection of anaerobic ammonium-oxidizing (anammox) bacteria

Black shale deposition on the northwest African Shelf during the Cenomanian/Turonian oceanic anoxic event: Climate coupling and global organic carbon burial

Bloom of a denitrifying methanotroph, 'Candidatus Methylomirabilis limnetica', in a deep stratified lake

Carbon and nitrogen fluxes associated with the cyanobacterium Aphanizomenon sp. in the Baltic Sea

Carbon isotope equilibration during sulphate-limited anaerobic oxidation of methane

Carbon, nitrogen and O(2) fluxes associated with the cyanobacterium Nodularia spumigena in the Baltic Sea. ⬇️

Cell-to-cell variation and specialization in sugar metabolism in clonal bacterial populations.

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland).

Complex nitrogen cycling in the sponge Geodia barretti

Correction: The rate and fate of N2 and C fixation by marine diatom-diazotroph symbioses

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment

Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf

Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters

Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously.

Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

Direct Cell Mass Measurements Expand the Role of Small Microorganisms in Nature

Distribution of a consortium between unicellular algae and the N2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean

Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico.

Doubling of marine dinitrogen-fixation rates based on direct measurements

Enhanced Nitrogen Loss by Eddy-Induced Vertical Transport in the Offshore Peruvian Oxygen Minimum Zone.

Enhanced productivity led to increased organic carbon burial in the euxinic North Atlantic basin during the late Cenomanian oceanic anoxic event

Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria

Epifluorescence, SEM, TEM and nanoSIMS image analysis of the cold phenotype of Clostridium psychrophilum at subzero temperatures

Evidence of nitrification and denitrification in high and low microbial abundance sponges

Extensive nitrogen loss from permeable sediments off North-West Africa

Extremely high sea-surface temperatures at low latitudes during the middle Cretaceous as revealed by archaeal membrane lipids

Facets of diazotrophy in the oxygen minimum zone waters off Peru

GeneFISH--an in situ technique for linking gene presence and cell identity in environmental microorganisms

Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy

HISH-SIMS analysis of bacterial uptake of algal-derived carbon in the Río de la Plata estuary.

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre

High cell-specific rates of nitrogen and carbon fixation by the cyanobacterium Aphanizomenon sp. at low temperatures in the Baltic Sea.

High rates of microbial dinitrogen fixation and sulfate reduction associated with the Mediterranean seagrass Posidonia oceanica.

Impact of temperature on ladderane lipid distribution in anammox bacteria

In situ identification and N₂ and C fixation rates of uncultivated cyanobacteria populations

Inorganic carbon fixation by sulfate-reducing bacteria in the Black Sea water column

Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea

Intensive cryptic microbial iron cycling in the low iron water column of the meromictic Lake Cadagno

Iron isotope and trace metal records of iron cycling in the proto-North Atlantic during the Cenomanian-Turonian oceanic anoxic event (OAE-2)

Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway).

Light-Dependent Aerobic Methane Oxidation Reduces Methane Emissions from Seasonally Stratified Lakes

Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea

Look@NanoSIMS--a tool for the analysis of nanoSIMS data in environmental microbiology

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation

Measuring carbon and N2 fixation in field populations of colonial and free-living unicellular cyanobacteria using nanometer-scale secondary ion mass spectrometry(1).

Mechanisms of transient nitric oxide and nitrous oxide production in a complex biofilm.

Metabolic specialization of denitrifiers in permeable sediments controls N 2 O emissions

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

Methane oxidation coupled to oxygenic photosynthesis in anoxic waters

Methane stimulates massive nitrogen loss from freshwater reservoirs in India.

Microbial Pathways for Nitrogen Loss in an Upland Soil.

Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system

Microbial nitrogen cycling processes in oxygen minimum zones.

N2 fixation in free-floating filaments of Trichodesmium is higher than in transiently suboxic colony microenvironments

N2-fixation, ammonium release and N-transfer to the microbial and classical food web within a plankton community

N2-fixing cyanobacteria supplied nutrient N for Cretaceous oceanic anoxic events