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List of works by Emiley A Eloe-Fadrosh

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

Advancing Genome-Resolved Metagenomics beyond the Shotgun

article published in 2019

Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article

Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 01 March 2020

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

scientific article published on 21 September 2017

COVID-19 pandemic reveals the peril of ignoring metadata standards

scientific article published on 19 June 2020

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere

scientific article published on 07 February 2019

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

scientific article published on 21 December 2020

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

scientific article published on 01 January 2019

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021

Correction to: Towards a balanced view of the bacterial tree of life

scientific article published on 15 November 2017

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

scientific article published in February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 22 July 2019

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

scientific article published on 19 March 2018

Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

scientific article published in May 2022

Diversity and Distribution of a Novel Genus of Hyperthermophilic <i>Aquificae</i> Viruses Encoding a Proof-Reading Family-A DNA Polymerase

scientific article published on 12 November 2020

Diversity, evolution, and classification of virophages uncovered through global metagenomics

scientific article published on 10 December 2019

Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil

scientific article published on 05 May 2020

Ecology and molecular targets of hypermutation in the global microbiome

scientific article published on 24 May 2021

Ecotype diversity and conversion in Photobacterium profundum strains

scientific article published on 13 May 2014

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons

scientific article published on 28 August 2019

Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti

scientific article published on 01 January 2019

Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities

scientific article published on 02 May 2019

Genomic variation and biogeography of Antarctic haloarchaea.

scientific article published on 20 June 2018

Giant virus diversity and host interactions through global metagenomics

scientific article published on 22 January 2020

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

scientific article published on 27 January 2016

Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions

scientific article published on 15 January 2021

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

scientific article published on 01 January 2019

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes

scientific article published on 01 January 2019

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

scientific article published on 02 November 2020

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

scientific article published in 2022

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

scientific article published on 09 August 2020

Insights into the dynamics between viruses and their hosts in a hot spring microbial mat

scientific article published on 13 July 2020

Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota

scientific article

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials

scientific article published on 16 October 2019

Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

scientific article published in February 2016

Metatranscriptomes of California grassland soil microbial communities in response to rewetting

scientific article published in 2024

Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome

scientific article published on 02 January 2020

Microbes and Climate Change: a Research Prospectus for the Future

scientific article published in 2022

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

scientific article published on 22 July 2019

Microbiome Data Science: Understanding Our Microbial Planet

scientific article

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot

scientific article published on 31 July 2019

Minimum Information about an Uncultivated Virus Genome (MIUViG)

scientific article published on 17 December 2018

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

Optimizing genome assembly from PCR-amplified metagenomes

scientific article published in 2019

Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures

scientific article published on 05 July 2019

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

Terabase-scale metagenome coassembly with MetaHipMer

scientific article published on 01 July 2020

The Human Microbiome: From Symbiosis to Pathogenesis ⬇️

scientific article published on January 1, 2013

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

scientific article published on 29 October 2020

The National Microbiome Data Collaborative: enabling microbiome science

scientific article published on 29 April 2020

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021

Towards a balanced view of the bacterial tree of life

scientific article published on 17 October 2017

Towards a genome-based virus taxonomy

scientific article published on 01 August 2019

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

scientific article published on 04 July 2019

Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary

scientific article published on 24 May 2019

Uncovering Earth’s virome

scientific article (publication date: 17 August 2016)

Unexpected host dependency of Antarctic Nanohaloarchaeota

scientific article published on 28 June 2019

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