List of works - Andrew S Allen

A case-control collapsing analysis identifies epilepsy genes implicated in trio sequencing studies focused on de novo mutations

scientific article published on 29 November 2017

A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting

scientific article

A longitudinal examination of the psychoeducational, neurocognitive, and psychiatric functioning in children with 22q11.2 deletion syndrome

scientific article published on 16 March 2013

A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS

scientific article published on 02 April 2019

An Exome Sequencing Study to Assess the Role of Rare Genetic Variation in Pulmonary Fibrosis

scientific article published on 18 January 2017

Bayesian estimation of genetic regulatory effects in high-throughput reporter assays

scientific article published on 01 January 2020

Biological concepts in human sodium channel epilepsies and their relevance in clinical practice

scientific article published on 23 February 2020

Correcting signal biases and detecting regulatory elements in STARR-seq data

scientific article published on 15 March 2021

De novo mutations in epileptic encephalopathies

scientific article

Developing High-Throughput Assays to Analyze and Screen Electrophysiological Phenotypes

scientific article published on 01 January 2018

Effects of a patient-derived de novo coding alteration of CACNA1I in mice connect a schizophrenia risk gene with sleep spindle deficits

scientific article published on 23 January 2020

Efficient estimation of grouped survival models.

scientific article published on 28 May 2019

Exome-Based Rare-Variant Analyses in CKD

scientific article published on 13 May 2019

Facilitating the Calculation of the Efficient Score Using Symbolic Computing

Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus

scientific article

Incorporating external information to improve sparse signal detection in rare-variant gene-set-based analyses

scientific article published on 11 February 2020

Leveraging population information in family-based rare variant association analyses of quantitative traits.

scientific article

Loss of tubulin deglutamylase CCP1 causes infantile-onset neurodegeneration

scientific article published on 12 November 2018

Mapping eQTL by leveraging multiple tissues and DNA methylation

scientific article published on 18 October 2017

Neurogranin, Encoded by the Schizophrenia Risk Gene NRGN, Bidirectionally Modulates Synaptic Plasticity via Calmodulin-Dependent Regulation of the Neuronal Phosphoproteome

scientific article published on 29 July 2020

Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics

scientific article published on 10 August 2017

Overexpression of NEUROG2 and NEUROG1 in human embryonic stem cells produces a network of excitatory and inhibitory neurons

scientific article published on 30 January 2019

Prevalences of Type 2 Diabetes, the Insulin Resistance Syndrome, and Coronary Heart Disease in an Elderly, Biethnic Population ⬇️

scientific article published on June 1, 1998

Response to Lee et al

article

Score-based adjustment for confounding by population stratification in genetic association studies

scientific article published on July 2010

Sequencing studies in human genetics: design and interpretation.

scientific article

Targeted long-read sequencing identifies missing disease-causing variation

scientific article published on 02 July 2021

Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

scientific article

Testing the effect of rare compound-heterozygous and recessive mutations in case--parent sequencing studies

scientific article published on 28 January 2015

The Intolerance of Regulatory Sequence to Genetic Variation Predicts Gene Dosage Sensitivity

scientific article published on 2 September 2015

bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens

scientific article published on 01 October 2018

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays

scientific article published on 01 October 2018

List of works by Andrew S Allen

A case-control collapsing analysis identifies epilepsy genes implicated in trio sequencing studies focused on de novo mutations

A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting

A longitudinal examination of the psychoeducational, neurocognitive, and psychiatric functioning in children with 22q11.2 deletion syndrome

A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS

An Exome Sequencing Study to Assess the Role of Rare Genetic Variation in Pulmonary Fibrosis

Bayesian estimation of genetic regulatory effects in high-throughput reporter assays

Biological concepts in human sodium channel epilepsies and their relevance in clinical practice

Correcting signal biases and detecting regulatory elements in STARR-seq data

De novo mutations in epileptic encephalopathies

Developing High-Throughput Assays to Analyze and Screen Electrophysiological Phenotypes

Effects of a patient-derived de novo coding alteration of CACNA1I in mice connect a schizophrenia risk gene with sleep spindle deficits

Efficient estimation of grouped survival models.

Exome-Based Rare-Variant Analyses in CKD

Facilitating the Calculation of the Efficient Score Using Symbolic Computing

Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus

Incorporating external information to improve sparse signal detection in rare-variant gene-set-based analyses

Leveraging population information in family-based rare variant association analyses of quantitative traits.

Loss of tubulin deglutamylase CCP1 causes infantile-onset neurodegeneration

Mapping eQTL by leveraging multiple tissues and DNA methylation

Neurogranin, Encoded by the Schizophrenia Risk Gene NRGN, Bidirectionally Modulates Synaptic Plasticity via Calmodulin-Dependent Regulation of the Neuronal Phosphoproteome

Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics

Overexpression of NEUROG2 and NEUROG1 in human embryonic stem cells produces a network of excitatory and inhibitory neurons

Prevalences of Type 2 Diabetes, the Insulin Resistance Syndrome, and Coronary Heart Disease in an Elderly, Biethnic Population ⬇️

Response to Lee et al

Score-based adjustment for confounding by population stratification in genetic association studies

Sequencing studies in human genetics: design and interpretation.

Targeted long-read sequencing identifies missing disease-causing variation

Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

Testing the effect of rare compound-heterozygous and recessive mutations in case--parent sequencing studies

The Intolerance of Regulatory Sequence to Genetic Variation Predicts Gene Dosage Sensitivity

bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays