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List of works by Karen W Davenport

A Public Website for the Automated Assessment and Validation of SARS-CoV-2 Diagnostic PCR Assays

scientific article published on 10 August 2020

A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.

scientific article

Clostridium botulinum strain Af84 contains three neurotoxin gene clusters: bont/A2, bont/F4 and bont/F5.

scientific article

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

scientific article published on 12 September 2013

Complete Genome Sequence of Clostridium clariflavum DSM 19732.

scientific article

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T

scientific article

Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

scientific article published on 14 March 2013

Complete genome sequence of Desulfarculus baarsii type strain (2st14).

scientific article

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

scientific article

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

scientific article (publication date: 20 December 2013)

Complete genome sequence of Ferrimonas balearica type strain (PAT).

scientific article

Complete genome sequence of Staphylothermus hellenicus P8

scientific article

Complete genome sequence of Thermosphaera aggregans type strain (M11TL)

scientific article

Complete genome sequence of Thermovibrio ammonificans HB-1(T), a thermophilic, chemolithoautotrophic bacterium isolated from a deep-sea hydrothermal vent

scientific article published on 26 September 2012

Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191.

scientific article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

scientific article

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T)

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).

scientific article published on 03 June 2016

Complete genome sequences for 35 biothreat assay-relevant bacillus species

scientific article

Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor

scientific article published on 30 April 2015

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

scientific article

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

scientific article published on 18 January 2018

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

scientific article published on 21 April 2016

Correction: Clostridium botulinum Strain Af84 Contains Three Neurotoxin Gene Clusters: Bont/A2, bont/F4 and bont/F5.

scientific article published on 4 November 2013

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

scientific article

Draft Genome Sequence and Description of Janthinobacterium sp. Strain CG3, a Psychrotolerant Antarctic Supraglacial Stream Bacterium

scientific article

Draft Genome Sequence of Enterobacter cloacae Strain S611

scientific article

Draft Genome Sequence of Medium-Chain-Length Polyhydroxyalkanoate-Producing Pseudomonas putida Strain LS46 ⬇️

scientific article published on April 18, 2013

Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat.

scientific article published on 26 December 2013

Draft Genome Sequence of Sorghum Grain Mold Fungus Epicoccum sorghinum, a Producer of Tenuazonic Acid ⬇️

scientific article published on 26 January 2017

Draft Genome Sequence of Syntrophorhabdus aromaticivorans Strain UI, a Mesophilic Aromatic Compound-Degrading Syntroph

scientific article published on 06 February 2014

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets

scientific article

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

scientific article published in 2022

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

scientific article

Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome.

scientific article published on 29 August 2017

Facile, high quality sequencing of bacterial genomes from small amounts of DNA.

scientific article

Finished Genome Assembly of Warm Spring Isolate Francisella novicida DPG 3A-IS.

scientific article

Finished Genome Assembly of Yersinia pestis EV76D and KIM 10v.

scientific article

Finished Genome Sequence of Bacillus cereus Strain 03BB87, a Clinical Isolate with B. anthracis Virulence Genes.

scientific article

Genome Assemblies for 11 Yersinia pestis Strains Isolated in the Caucasus Region

scientific article

Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6

scientific article published on 30 June 2016

Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin.

scientific article

Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans

scientific article published in March 2014

Genome analysis of Desulfotomaculum gibsoniae strain Groll(T) a highly versatile Gram-positive sulfate-reducing bacterium

scientific article

Genome analysis of Desulfotomaculum kuznetsovii strain 17(T) reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI(T)

scientific article published on 15 April 2013

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov

scientific article

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece

scientific article

Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

scientific article

Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements

scientific article published on 30 July 2013

Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B

scientific article

Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037

scientific article

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943

scientific article (publication date: 20 December 2013)

Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.

scientific article

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

scientific article

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).

scientific article published on 30 July 2013

Genome sequencing of 18 francisella strains to aid in assay development and testing

scientific article published on 30 April 2015

Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

scientific article published in 2018

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

scientific article

Genomics for key players in the N cycle from guinea pigs to the next frontier

scientific article published on January 2011

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

scientific article published on 30 September 2013

High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.

scientific article

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

scientific article published on 28 July 2017

Improving Genome Assemblies by Sequencing PCR Products with PacBio ⬇️

scientific article published on July 1, 2012

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

scientific article

Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania

scientific article published on 02 December 2019

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

scientific article

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

scientific article published on 30 July 2013

Remedial treatment of corroded iron objects by environmental isolates

scientific article published on 23 January 2019

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life

scientific article published on 03 February 2020

The National Microbiome Data Collaborative: enabling microbiome science

scientific article published on 29 April 2020

The genome ofSyntrophorhabdus aromaticivoransstrain UI provides new insights for syntrophic aromatic compound metabolism and electron flow

scientific article

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

scientific article published on 30 April 2015

Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica

scientific article published on 02 June 2020

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones

scientific article published on 11 June 2016

Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei

scientific article

Widespread bacterial diversity within the bacteriome of fungi

scientific article published on 07 October 2021

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