List of works - Jan Dvorak

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

scientific article published on 22 April 2013

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

scientific article

A High-Density Genetic Map of Wild Emmer Wheat from the Karaca Dağ Region Provides New Evidence on the Structure and Evolution of Wheat Chromosomes.

scientific article published on 20 October 2017

A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms

scientific article

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening ⬇️

scientific article published on December 6, 2010

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus

scientific article

A rare gain of function mutation in a wheat tandem kinase confers resistance to powdery mildew

scientific article published on 03 February 2020

Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

scientific article published on 04 February 2013

Analysis of Brachypodium genomes with genome-wide optical maps

scientific article published on 08 June 2018

Analysis of the bread wheat genome using whole-genome shotgun sequencing

scientific article

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence ⬇️

scientific article published on January 25, 2011

BatchPrimer3: a high throughput web application for PCR and sequencing primer design

scientific article

Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array

scientific article

Characterizing the walnut genome through analyses of BAC end sequences.

scientific article

Co-located quantitative trait loci mediate resistance to Agrobacterium tumefaciens, Phytophthora cinnamomi, and P. pini in Juglans microcarpa × J. regia hybrids

scientific article published on 01 May 2021

Comparative DNA sequence analysis of wheat and rice genomes

scientific article

Comparative genetic maps reveal extreme crossover localization in the Aegilops speltoides chromosomes.

scientific article published on 11 October 2005

Computational Identification and Comparative Analysis of Conserved miRNAs and Their Putative Target Genes in the Juglans regia and J. microcarpa Genomes

scientific article published on 09 October 2020

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

scientific article

Correction to: Recombination between homoeologous chromosomes induced in durum wheat by the Aegilops speltoides Su1-Ph1 suppressor

scientific article published on 01 December 2019

Correction: Rapid Genome Mapping in Nanochannel Arrays for Highly Complete and Accurate Sequence Assembly of the Complex Genome

scientific article published on 8 April 2013

Deletion polymorphism in wheat chromosome regions with contrasting recombination rates

scientific article published on November 2004

Draft genome of the wheat A-genome progenitor Triticum urartu

scientific article

Dynamic Evolution of α-Gliadin Prolamin Gene Family in Homeologous Genomes of Hexaploid Wheat.

scientific article published on 26 March 2018

Dynamic evolution of resistance gene analogs in the orthologous genomic regions of powdery mildew resistance gene MlIW170 in Triticum dicoccoides and Aegilops tauschii.

scientific article

Efficacy of clone fingerprinting methodologies

article

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

scientific article

Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat

scientific article

Gene Duplication and Evolution Dynamics in the Homeologous Regions Harboring Multiple Prolamin and Resistance Gene Families in Hexaploid Wheat.

scientific article

Genetic and physical mapping of powdery mildew resistance gene MlHLT in Chinese wheat landrace Hulutou

scientific article published on 4 December 2014

GenoProfiler: batch processing of high-throughput capillary fingerprinting data

scientific article

Genome Sequence: A Framework for Meta-analysis of Wheat QTLs

scientific article published on 07 March 2019

Genome plasticity a key factor in the success of polyploid wheat under domestication

scientific article published on June 2007

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

scientific article

Genome-wide introgression from a bread wheat × Lophopyrum elongatum amphiploid into wheat

scientific article published on 24 January 2020

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

scientific article

Improved Genome Sequence of Wild Emmer Wheat Zavitan with the Aid of Optical Maps

scientific article published on 07 March 2019

Insular organization of gene space in grass genomes

scientific article

Introgression of perennial growth habit from Lophopyrum elongatum into wheat

scientific article published on 03 June 2020

Introgression of the Aegilops speltoides Su1-Ph1 Suppressor into Wheat

scientific article published on 20 December 2017

Leveraging genomic resources of model species for the assessment of diversity and phylogeny in wild and domesticated lentil

scientific article published on 30 March 2011

Linkage disequilibrium and association analysis of stripe rust resistance in wild emmer wheat (Triticum turgidum ssp. dicoccoides) population in Israel

scientific article

Mechanisms and rates of birth and death of dispersed duplicated genes during the evolution of a multigene family in diploid and tetraploid wheats

scientific article

Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.

scientific article

Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat

scientific article (publication date: July 2006)

New insights into structural organization and gene duplication in a 1.75-Mb genomic region harboring the α-gliadin gene family in Aegilops tauschii, the source of wheat D genome

scientific article published on 30 August 2017

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

scientific article

Origin and evolution of the bread wheat D genome

scientific article published in 2024

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS

scientific article

Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.

scientific article

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

scientific article published on 01 November 2021

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.).

scientific article

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

scientific article

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

scientific article published on 16 October 2015

Rapid evolutionary dynamics in a 2.8-Mb chromosomal region containing multiple prolamin and resistance gene families in Aegilops tauschii

scientific article

Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome

scientific article

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B

Recombination between homoeologous chromosomes induced in durum wheat by the Aegilops speltoides Su1-Ph1 suppressor

scientific article published on 16 September 2019

Sequence polymorphism in polyploid wheat and their d-genome diploid ancestor

scientific article

Sequencing a × hybrid yields high-quality genome assemblies of parental species

scientific article published on 25 March 2019

Sequencing and comparative analyses of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes

scientific article

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay

scientific article published on 18 May 2009

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat

scientific article

Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size

scientific article published on 17 June 2018

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

scientific article

Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates

scientific article

Tempos of gene locus deletions and duplications and their relationship to recombination rate during diploid and polyploid evolution in the Aegilops-Triticum alliance

scientific article

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences

scientific article published on 6 November 2007

The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms

scientific article

The origin of spelt and free-threshing hexaploid wheat

scientific article

Wheat domestication in light of haplotype analyses of the Brittle rachis 1 genes (BTR1-A and BTR1-B)

scientific article published on 19 May 2019

List of works by Jan Dvorak

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

A High-Density Genetic Map of Wild Emmer Wheat from the Karaca Dağ Region Provides New Evidence on the Structure and Evolution of Wheat Chromosomes.

A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening ⬇️

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus

A rare gain of function mutation in a wheat tandem kinase confers resistance to powdery mildew

Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat

Analysis of Brachypodium genomes with genome-wide optical maps

Analysis of the bread wheat genome using whole-genome shotgun sequencing

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence ⬇️

BatchPrimer3: a high throughput web application for PCR and sequencing primer design

Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array

Characterizing the walnut genome through analyses of BAC end sequences.

Co-located quantitative trait loci mediate resistance to Agrobacterium tumefaciens, Phytophthora cinnamomi, and P. pini in Juglans microcarpa × J. regia hybrids

Comparative DNA sequence analysis of wheat and rice genomes

Comparative genetic maps reveal extreme crossover localization in the Aegilops speltoides chromosomes.

Computational Identification and Comparative Analysis of Conserved miRNAs and Their Putative Target Genes in the Juglans regia and J. microcarpa Genomes

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

Correction to: Recombination between homoeologous chromosomes induced in durum wheat by the Aegilops speltoides Su1-Ph1 suppressor

Correction: Rapid Genome Mapping in Nanochannel Arrays for Highly Complete and Accurate Sequence Assembly of the Complex Genome

Deletion polymorphism in wheat chromosome regions with contrasting recombination rates

Draft genome of the wheat A-genome progenitor Triticum urartu

Dynamic Evolution of α-Gliadin Prolamin Gene Family in Homeologous Genomes of Hexaploid Wheat.

Dynamic evolution of resistance gene analogs in the orthologous genomic regions of powdery mildew resistance gene MlIW170 in Triticum dicoccoides and Aegilops tauschii.

Efficacy of clone fingerprinting methodologies

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat

Gene Duplication and Evolution Dynamics in the Homeologous Regions Harboring Multiple Prolamin and Resistance Gene Families in Hexaploid Wheat.

Genetic and physical mapping of powdery mildew resistance gene MlHLT in Chinese wheat landrace Hulutou

GenoProfiler: batch processing of high-throughput capillary fingerprinting data

Genome Sequence: A Framework for Meta-analysis of Wheat QTLs

Genome plasticity a key factor in the success of polyploid wheat under domestication

Genome sequencing and analysis of the model grass Brachypodium distachyon

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

Genome-wide introgression from a bread wheat × Lophopyrum elongatum amphiploid into wheat

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

Improved Genome Sequence of Wild Emmer Wheat Zavitan with the Aid of Optical Maps

Insular organization of gene space in grass genomes

Introgression of perennial growth habit from Lophopyrum elongatum into wheat

Introgression of the Aegilops speltoides Su1-Ph1 Suppressor into Wheat

Leveraging genomic resources of model species for the assessment of diversity and phylogeny in wild and domesticated lentil

Linkage disequilibrium and association analysis of stripe rust resistance in wild emmer wheat (Triticum turgidum ssp. dicoccoides) population in Israel

Mechanisms and rates of birth and death of dispersed duplicated genes during the evolution of a multigene family in diploid and tetraploid wheats

Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.

Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat

New insights into structural organization and gene duplication in a 1.75-Mb genomic region harboring the α-gliadin gene family in Aegilops tauschii, the source of wheat D genome

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

Origin and evolution of the bread wheat D genome

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS

Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.).

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

Rapid evolutionary dynamics in a 2.8-Mb chromosomal region containing multiple prolamin and resistance gene families in Aegilops tauschii

Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B

Recombination between homoeologous chromosomes induced in durum wheat by the Aegilops speltoides Su1-Ph1 suppressor

Sequence polymorphism in polyploid wheat and their d-genome diploid ancestor

Sequencing a × hybrid yields high-quality genome assemblies of parental species

Sequencing and comparative analyses of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat

Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates

Tempos of gene locus deletions and duplications and their relationship to recombination rate during diploid and polyploid evolution in the Aegilops-Triticum alliance

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences

The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms

The origin of spelt and free-threshing hexaploid wheat

Wheat domestication in light of haplotype analyses of the Brittle rachis 1 genes (BTR1-A and BTR1-B)