Search filters

List of works by Jim K Fredrickson

AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.

scientific article published on January 2006

Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface

scientific article published in May 2001

Biofilm shows spatially stratified metabolic responses to contaminant exposure

scientific article

Characterization of an electron conduit between bacteria and the extracellular environment

scientific article

Comparative systems biology across an evolutionary gradient within the Shewanella genus.

scientific article published in September 2009

Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes

scientific article

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation

scientific article

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism.

scientific article published on 16 December 2016

Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

scientific article published on 29 July 2016

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes.

scientific article

Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment

scientific article

Dynamic modeling of aerobic growth of Shewanella oneidensis. Predicting triauxic growth, flux distributions, and energy requirement for growth

scientific article published on 26 September 2012

Dynamics in microbial communities: unraveling mechanisms to identify principles

scientific article published on 19 December 2014

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

scientific article

Editorial: Systems Biology and Ecology of Microbial Mat Communities

scientific article

Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms

scholarly article

Engineering microbial consortia for controllable outputs

scientific article published on 11 March 2016

Estimating and mapping ecological processes influencing microbial community assembly

scientific article published on May 2015

Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration.

scientific article published on June 2012

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

scientific article

Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a

scientific article published on 30 January 2014

Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142

scientific article

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

scientific article

Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization

scholarly article

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

scientific article

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

scientific article

Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

scientific article

In Situ Molecular Imaging of the Biofilm and Its Matrix.

scientific article

In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance

scientific article

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

scientific article published on 07 March 2017

Induction of aromatic catabolic activity in Sphingomonas aromaticivorans strain F199.

scientific article

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing

scientific article published on 29 April 2014

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

scientific article published on 8 February 2018

Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities

scientific article

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

scientific article published in 2021

Modeling biofilms with dual extracellular electron transfer mechanisms

scientific article published in November 2013

Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone

scientific article published on 15 February 2013

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

scientific article (publication date: 2014)

Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beads

scientific article

Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

scientific article published on 7 March 2018

Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions

scientific article published on 30 September 2011

Quantifying community assembly processes and identifying features that impose them

scientific article

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer

scientific article published on July 2015

Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite

scientific article

Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria

scientific article published in December 2002

Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process

scientific article published on 29 September 2017

Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State

scientific article published in April 2003

Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes

scientific article

Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean

scientific article

Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock

scientific article

Single-Cell Imaging and Spectroscopic Analyses of Cr(VI) Reduction on the Surface of Bacterial Cells ⬇️

scientific article published on January 9, 2013

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer

scientific article published on February 2014

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer

scientific article

Stochastic and deterministic assembly processes in subsurface microbial communities

scientific article

Sustained H 2 Production Driven by Photosynthetic Water Splitting in a Unicellular Cyanobacterium ⬇️

scientific article published on August 7, 2012

The 'porin-cytochrome' model for microbe-to-mineral electron transfer.

scientific article published on 30 May 2012

The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface

scientific article published on 18 April 2014

The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis

scientific article published in October 2008

Trends and future challenges in sampling the deep terrestrial biosphere

scientific article

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth

scientific article published on 26 July 2016

Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction

scientific article

Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

scientific article

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site

scientific article

Paulina is supported by:

About Paulina

Help