List of works by Andrej Shevchenko

"De novo" sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry

scientific article published on 01 January 2002

A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe

scientific article

A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity

scientific article

Absolute Quantification of Proteins in the Eye of Drosophila melanogaster

scientific article published on 14 July 2020

Accumulation of raft lipids in T-cell plasma membrane domains engaged in TCR signalling

scientific article

Acetyl-CoA carboxylase 1-dependent lipogenesis promotes autophagy downstream of AMPK

scientific article published on 17 June 2019

Activation of transcription factor NF-kappaB requires ELKS, an IkappaB kinase regulatory subunit

scientific article

Adaptation of a DNA replication checkpoint response depends upon inactivation of Claspin by the Polo-like kinase

scientific article

Adenovirus exploits the cellular aggresome response to accelerate inactivation of the MRN complex

scientific article published on November 2005

Analysis of the adenovirus E1B-55K-anchored proteome reveals its link to ubiquitination machinery

scientific article

Ataxia-telangiectasia mutated (ATM)-dependent activation of ATR occurs through phosphorylation of TopBP1 by ATM.

scientific article

Biochemical Composition and Assembly of Biosilica-associated Insoluble Organic Matrices from the Diatom Thalassiosira pseudonana

scientific article published on 28 December 2015

Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians

scientific article published on 04 January 2019

Ceramides And Stress Signalling Intersect With Autophagic Defects In Neurodegenerative Drosophila blue cheese (bchs) Mutants

scientific article

Charting the protein complexome in yeast by mass spectrometry.

scientific article

Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment

scientific article

Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division

scientific article

Dbf4-dependent CDC7 kinase links DNA replication to the segregation of homologous chromosomes in meiosis I.

scientific article

Deciphering protein complexes and protein interaction networks by tandem affinity purification and mass spectrometry: analytical perspective.

scientific article published in March 2002

Direct regulation of Treslin by cyclin-dependent kinase is essential for the onset of DNA replication ⬇️

scientific article

Ecological lipidology

scientific article published in 2022

Fast-response proteomics by accelerated in-gel digestion of proteins

scientific article

Flexibility of a eukaryotic lipidome--insights from yeast lipidomics

scientific article published in 2012

Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry

scientific article

Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

scientific article published on 6 October 2017

High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts

scientific article

Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome

scientific article published in September 2004

Horizontal carryover of proteins on one-dimensional polyacrylamide gels may jeopardize gel-enhanced liquid chromatography mass spectrometry proteomic interpretations

scientific article published on 19 November 2011

Hrp48, a Drosophila hnRNPA/B homolog, binds and regulates translation of oskar mRNA.

scientific article published in May 2004

Human lysophosphatidylcholine acyltransferases 1 and 2 are located in lipid droplets where they catalyze the formation of phosphatidylcholine

scientific article

Identification of glycosylated marker proteins of epithelial polarity in MDCK cells by homology driven proteomics

scientific article

Intensity-Independent Noise Filtering in FT MS and FT MS/MS Spectra for Shotgun Lipidomics

scientific article

Interaction of Chk1 with Treslin negatively regulates the initiation of chromosomal DNA replication.

scientific article

KNL-1 directs assembly of the microtubule-binding interface of the kinetochore in C. elegans ⬇️

scientific article published on October 1, 2003

Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition

scientific article

Live-cell lipid biochemistry reveals a role of diacylglycerol side-chain composition for cellular lipid dynamics and protein affinities

scientific article published on 25 March 2020

Liver-restricted Repin1 deficiency improves whole-body insulin sensitivity, alters lipid metabolism, and causes secondary changes in adipose tissue in mice.

scientific article

Loss of hepatic Mboat7 leads to liver fibrosis

scientific article published on 26 June 2020

MS Western, a method of multiplexed absolute protein quantification is a practical alternative to Western blotting.

scientific article published on 30 November 2017

MS-based lipidomics of human blood plasma - a community-initiated position paper to develop accepted guidelines

article

Mcm2 is a direct substrate of ATM and ATR during DNA damage and DNA replication checkpoint responses

scientific article

Median-Based Absolute Quantification of Proteins Using Fully Unlabeled Generic Internal Standard (FUGIS)

scientific article published on 22 November 2021

Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation

scientific article published in 2013

Monitoring Membrane Lipidome Turnover by Metabolic 15N Labeling and Shotgun Ultra-High-Resolution Orbitrap Fourier Transform Mass Spectrometry.

scientific article

MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry

scientific article published in March 2003

Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes

scientific article published on 01 January 2003

Ontogenetic variations in the venom proteome of the Amazonian snake Bothrops atrox

scientific article

Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China

scientific article

Orm family proteins mediate sphingolipid homeostasis

scientific article

Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation

scientific article

Proteomics identifies the composition and manufacturing recipe of the 2500-year old sourdough bread from Subeixi cemetery in China

scientific article published on 26 November 2013

Proteomics of early zebrafish embryos

scientific article

Purification and mass spectrometry identification of microtubule-binding proteins from Xenopus egg extracts

scientific article published on January 2007

Quantitative Fragmentation Model for Bottom-Up Shotgun Lipidomics

scientific article published on 05 September 2019

Quantitative profiling of phospholipids by multiple precursor ion scanning on a hybrid quadrupole time-of-flight mass spectrometer

scientific article

Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.

scientific article

Role for Rif1 in the checkpoint response to damaged DNA in Xenopus egg extracts

scientific article published on 15 March 2012

Roles of replication fork-interacting and Chk1-activating domains from Claspin in a DNA replication checkpoint response

scientific article

Saccharomyces cerevisiae Bzz1p is implicated with type I myosins in actin patch polarization and is able to recruit actin-polymerizing machinery in vitro

scientific article

Salt-induced changes in the plasma membrane proteome of the halotolerant alga Dunaliella salina as revealed by blue native gel electrophoresis and nano-LC-MS/MS analysis

scientific article

Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification

scientific article

Sequence similarity-based proteomics in insects: characterization of the larvae venom of the Brazilian moth Cerodirphia speciosa

scientific article published on May 2005

Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing

scientific article

Serum Proteases Potentiate BMP-Induced Cell Cycle Re-entry of Dedifferentiating Muscle Cells during Newt Limb Regeneration

scientific article published in March 2017

Shotgun Lipidomics Combined with Laser Capture Microdissection: A Tool To Analyze Histological Zones in Cryosections of Tissues

scientific article published on 30 July 2018

Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control

scientific article

The Mre11-Rad50-Nbs1 complex mediates activation of TopBP1 by ATM

scientific article published on 11 March 2009

The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains

scientific article published on 13 November 2009

The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation ⬇️

scientific article published on May 15, 2003

The yeast APC/C subunit Mnd2 prevents premature sister chromatid separation triggered by the meiosis-specific APC/C-Ama1.

scientific article

Thermostable trypsin conjugates for high-throughput proteomics: synthesis and performance evaluation

scientific article

Tick-tock hedgehog-mutual crosstalk with liver circadian clock promotes liver steatosis

scientific article published on 01 February 2019

Top-down lipidomics reveals ether lipid deficiency in blood plasma of hypertensive patients

scientific article

Transcription control by E1A and MAP kinase pathway via Sur2 mediator subunit

scientific article

Treslin collaborates with TopBP1 in triggering the initiation of DNA replication

scientific article

Uncoupling of unwinding from DNA synthesis implies regulation of MCM helicase by Tof1/Mrc1/Csm3 checkpoint complex.

scientific article

Xenopus meiotic microtubule-associated interactome

scientific article

Paulina is supported by:

About Paulina

Help