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List of works by Mattia A Prosperi

A Prognostic Model for Estimating the Time to Virologic Failure in HIV-1 Infected Patients Undergoing a New Combination Antiretroviral Therapy Regimen ⬇️

scientific article published on June 14, 2011

A novel methodology for large-scale phylogeny partition

scientific article published on 24 May 2011

AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data

scientific article published on 01 May 2022

Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on "A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis"

scientific article published on 11 November 2020

Causal inference and counterfactual prediction in machine learning for actionable healthcare

scientific article published in 2020

Challenges in identifying asthma subgroups using unsupervised statistical learning techniques

scientific article published on December 2013

Challenges in interpreting allergen microarrays in relation to clinical symptoms: a machine learning approach

scientific article

Comparative determination of HIV-1 co-receptor tropism by Enhanced Sensitivity Trofile, gp120 V3-loop RNA and DNA genotyping

scientific article

Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis

scientific article published on 10 August 2020

Darunavir/ritonavir and raltegravir coadministered in routine clinical practice: Potential role for an unexpected drug interaction

scientific article published on 02 December 2010

Declining Prevalence of HIV-1 Drug Resistance in Antiretroviral Treatment-exposed Individuals in Western Europe ⬇️

scientific article published on January 11, 2013

Detection of drug resistance mutations at low plasma HIV-1 RNA load in a European multicentre cohort study ⬇️

scientific article published on May 30, 2011

Evolution pathways of IgE responses to grass and mite allergens throughout childhood

scientific article published on 8 May 2015

Fast and exact quantification of motif occurrences in biological sequences

scientific article published on 18 September 2021

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

scientific article published on 06 August 2019

Interpretation of genotypic HIV-1 resistance to darunavir and virological response: validation of available systems and of a new score

scientific article

Low rate of virological failure and maintenance of susceptibility to HIV‐1 protease inhibitors with first‐line lopinavir/ritonavir‐based antiretroviral treatment in clinical practice ⬇️

scientific article published on December 1, 2010

Multi-drug resistant Pseudomonas aeruginosa nosocomial strains: Molecular epidemiology and evolution

scientific article published in October 2018

Predicting phenotypes of asthma and eczema with machine learning

scientific article

Predictors of first-line antiretroviral therapy discontinuation due to drug-related adverse events in HIV-infected patients: a retrospective cohort study

scientific article

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

scientific article published on 07 May 2020

The application of artificial intelligence and data integration in COVID-19 studies: a scoping review

scientific article published on 06 May 2021

The global spread of 2019-nCoV: a molecular evolutionary analysis

scientific article published on 12 February 2020

The threshold bootstrap clustering: a new approach to find families or transmission clusters within molecular quasispecies

scientific article

Using Social Media Data to Understand the Impact of Promotional Information on Laypeople's Discussions: A Case Study of Lynch Syndrome

scientific article published on 13 December 2017

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