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List of works by Geoffrey J Faulkner

A promoter-level mammalian expression atlas

scientific article

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

scientific article

Alternate transcription of the Toll-like receptor signaling cascade

scientific article published on 17 February 2006

An early proinflammatory transcriptional response to tau pathology is age-specific and foreshadows reduced tau burden

scientific article published on 31 August 2021

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease.

scientific article

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

scientific article

Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage

scientific article published in June 2003

Corrigendum: Tiny RNAs associated with transcription start sites in animals

scholarly article published in Nature Genetics

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

scientific article

Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation

scientific article published on 19 March 2019

FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017

Genetic control of the innate immune response

scientific article

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.

scientific article

Hippocampal neurogenesis mediates sex-specific effects of social isolation and exercise on fear extinction in adolescence

scientific article published in 2021

L1 retrotransposition in the soma: a field jumping ahead.

scientific article published on 7 July 2018

Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome

publication published on 10 May 2021

Meeting report: mobile genetic elements and genome plasticity 2018.

scientific article

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

scientific article

Overcoming challenges and dogmas to understand the functions of pseudogenes

scientific article published on 17 December 2019

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

scientific article

Promoter architecture of mouse olfactory receptor genes

scientific journal article

Retrotransposon-induced mosaicism in the neural genome

scientific article published on 01 July 2018

Retrotransposons: Mobile and mutagenic from conception to death ⬇️

scientific article published on April 6, 2011

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

scientific article published in March 2018

Somatic retrotransposition alters the genetic landscape of the human brain

scientific article (publication date: 30 October 2011)

The regulated retrotransposon transcriptome of mammalian cells

scientific article (publication date: May 2009)

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Tiny RNAs associated with transcription start sites in animals

scientific article published on 19 April 2009

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

Visualization and analysis of RNA-Seq assembly graphs

scientific article published on 01 August 2019

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