List of works - Marek Kochańczyk

A mathematical model of bimodal epigenetic control of miR-193a in ovarian cancer stem cells

scientific article

Accounting for super-spreading gives the basic reproduction number R0 of COVID-19 that is higher than initially estimated

scientific article published on 01 May 2020

Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways

scientific article

Dynamics of COVID-19 pandemic at constant and time-dependent contact rates

scholarly article by Tomasz Lipniacki published in 2020

Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors of the corresponding birth-death process

scientific article published on 25 September 2012

Effective reaction rates for diffusion-limited reaction cycles

scientific article published in December 2015

Effective reaction rates in diffusion-limited phosphorylation-dephosphorylation cycles

scientific article published on 3 February 2015

Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System

scientific article

Impact of the contact and exclusion rates on the spread of COVID-19 pandemic

scientific article (preprint)

Importins promote high-frequency NF-κB oscillations increasing information channel capacity

scientific article

In silico structural study of random amino acid sequence proteins not present in nature.

scientific article

Information processing in the NF-κB pathway.

scientific article published on 21 November 2017

Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate

scientific article

Limits to the rate of information transmission through the MAPK pathway

article

Localization of ligand binding site in proteins identified in silico.

scientific article published on 30 March 2007

Never born proteins as a test case for ab initio protein structures prediction.

scientific article

Pareto-based evaluation of national responses to COVID-19 pandemic shows that saving lives and protecting economy are non-trade-off objectives

scientific article

Prediction of functional sites based on the fuzzy oil drop model

scientific article

Prediction of functionally important residues in globular proteins from unusual central distances of amino acids ⬇️

scientific article published on September 18, 2011

Prediction of ligand binding site and functionally important residues based on fuzzy-oil-drop model

scientific article published on 12 April 2007

RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα.

scientific article published on 7 March 2017

Relaxation oscillations and hierarchy of feedbacks in MAPK signaling

scientific article

SARS-CoV-2 Variant of Concern 202012/01 Has about Twofold Replicative Advantage and Acquires Concerning Mutations

scientific article

SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces.

scientific article published on 17 July 2017

Sampling rare events in stochastic reaction-diffusion systems within trajectory looping

scientific article published on 01 August 2018

Sequence-structure-function relation characterized in silico

scientific article published on 01 October 2006

Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis

scientific article published on 11 November 2013

Stochastic transitions in a bistable reaction system on the membrane

scientific article

Super-spreading events initiated the exponential growth phase of COVID-19 with ℛ0 higher than initially estimated

scientific article published on 23 September 2020

List of works by Marek Kochańczyk

A mathematical model of bimodal epigenetic control of miR-193a in ovarian cancer stem cells

Accounting for super-spreading gives the basic reproduction number R0 of COVID-19 that is higher than initially estimated

Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways

Dynamics of COVID-19 pandemic at constant and time-dependent contact rates

Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors of the corresponding birth-death process

Effective reaction rates for diffusion-limited reaction cycles

Effective reaction rates in diffusion-limited phosphorylation-dephosphorylation cycles

Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System

Impact of the contact and exclusion rates on the spread of COVID-19 pandemic

Importins promote high-frequency NF-κB oscillations increasing information channel capacity

In silico structural study of random amino acid sequence proteins not present in nature.

Information processing in the NF-κB pathway.

Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate

Limits to the rate of information transmission through the MAPK pathway

Localization of ligand binding site in proteins identified in silico.

Never born proteins as a test case for ab initio protein structures prediction.

Pareto-based evaluation of national responses to COVID-19 pandemic shows that saving lives and protecting economy are non-trade-off objectives

Prediction of functional sites based on the fuzzy oil drop model

Prediction of functionally important residues in globular proteins from unusual central distances of amino acids ⬇️

Prediction of ligand binding site and functionally important residues based on fuzzy-oil-drop model

RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα.

Relaxation oscillations and hierarchy of feedbacks in MAPK signaling

SARS-CoV-2 Variant of Concern 202012/01 Has about Twofold Replicative Advantage and Acquires Concerning Mutations

SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces.

Sampling rare events in stochastic reaction-diffusion systems within trajectory looping

Sequence-structure-function relation characterized in silico

Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis

Stochastic transitions in a bistable reaction system on the membrane

Super-spreading events initiated the exponential growth phase of COVID-19 with ℛ0 higher than initially estimated