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List of works by Alexander E Lipka

A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels

scientific article

A multi‐trait multi‐locus stepwise approach for conducting GWAS on correlated traits

scientific article published in 2022

Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches

scientific article

Accumulation of 5-hydroxynorvaline in maize (Zea mays) leaves is induced by insect feeding and abiotic stress

scientific article

An assessment of the performance of the logistic mixed model for analyzing binary traits in maize and sorghum diversity panels

scientific article published in PLoS ONE

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers.

scientific article published on 15 November 2018

Association Mapping of Flowering and Height Traits in Germplasm Enhancement of Maize Doubled Haploid (GEM-DH) Lines

scientific article published on 01 July 2018

Brassinosteroid and gibberellin control of seedling traits in maize (Zea mays L.).

scientific article published on 19 July 2017

Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds.

scientific article published on 24 December 2013

Characterization of Biosynthetic Pathways for the Production of the Volatile Homoterpenes DMNT and TMTT in Zea mays

scientific article published on 23 September 2016

Characterization of Disease Resistance Loci in the USDA Soybean Germplasm Collection Using Genome-Wide Association Studies.

scientific article published on 2 May 2016

CorrigendumMulti-Trait Genome-Wide Association Studies Reveal Loci Associated with Maize Inflorescence and Leaf Architecture

scientific article published on 01 August 2020

Engaging rural communities in genetic research: challenges and opportunities.

scientific article

Evaluation of RR-BLUP Genomic Selection Models that Incorporate Peak Genome-Wide Association Study Signals in Maize and Sorghum

scientific article published on 01 March 2019

Exploration of Life-Course Factors Influencing Phenotypic Outcomes in Crops

scientific article published on 30 June 2020

Field-Based High-Throughput Plant Phenotyping Reveals the Temporal Patterns of Quantitative Trait Loci Associated with Stress-Responsive Traits in Cotton.

scientific article published on 27 January 2016

From association to prediction: statistical methods for the dissection and selection of complex traits in plants.

scientific article published on 17 March 2015

GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction.

scientific article published on July 2016

GAPIT: genome association and prediction integrated tool

scientific article published on 13 July 2012

Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.).

scientific article published on 06 February 2020

Genetic Architecture of Soybean Yield and Agronomic Traits

article

Genetic variation associated with PPO-inhibiting herbicide tolerance in sorghum

scientific article published on 14 October 2020

Genome-Wide Analysis and Prediction of Resistance to Goss's Wilt in Maize

scientific article published on 01 June 2019

Genome-Wide Association Study of Brown Stem Rot Resistance in Soybean across Multiple Populations.

scientific article published in July 2016

Genome-wide analysis of branched-chain amino acid levels in Arabidopsis seeds.

scientific article published on 24 December 2013

Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions

scientific article

Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. ⬇️

scientific article published on 07 August 2013

Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass

scientific article

Genomic Prediction Informed by Biological Processes Expands Our Understanding of the Genetic Architecture Underlying Free Amino Acid Traits in Dry Arabidopsis Seeds

scientific article published on 25 September 2020

Genomic Prediction of Single Crosses in the Early Stages of a Maize Hybrid Breeding Pipeline

scientific article published on 19 September 2016

Genomic Selection for Predicting Fusarium Head Blight Resistance in a Wheat Breeding Program

scientific article published on 01 November 2015

Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies

scientific article published on 06 July 2020

Gibberellins Promote Brassinosteroids Action and Both Increase Heterosis for Plant Height in Maize (Zea mays L.).

scientific article

HAPPI GWAS: Holistic Analysis with Pre and Post Integration GWAS

scientific article published on 24 June 2020

Healthy Planet, Healthy Youth: A Food Systems Education and Promotion Intervention to Improve Adolescent Diet Quality and Reduce Food Waste

scientific article published on 11 August 2019

Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus

scientific article published on 09 December 2015

Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping

scientific article

Multi-Trait Genome-wide Association Studies Reveal Loci Associated with Maize Inflorescence and Leaf Architecture

scientific article published on 18 March 2020

NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis.

scientific article published on 26 May 2017

Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity

scientific article published on 28 June 2013

Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain.

scientific article

Optical topometry and machine learning to rapidly phenotype stomatal patterning traits for maize QTL mapping

scientific article published in 2021

Population Structure Analyses Provide Insight into the Source Populations Underlying Rural Isolated Communities in Illinois

scientific article published on 01 February 2019

Prevalence and clinical aspects of immigrants with myasthenia gravis in northern Europe

scientific article

Selinene Volatiles Are Essential Precursors for Maize Defense Promoting Fungal Pathogen Resistance.

scientific article published on 20 September 2017

Species dependence of [64Cu]Cu-Bis(thiosemicarbazone) radiopharmaceutical binding to serum albumins

scientific article published on 30 January 2008

Stability Analysis of Kernel Quality Traits in Exotic-Derived Doubled Haploid Maize Lines

scientific article published on 01 March 2019

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

scientific article

The Use of Targeted Marker Subsets to Account for Population Structure and Relatedness in Genome-Wide Association Studies of Maize (Zea mays L.).

scientific article published on 27 May 2016

The regulatory landscape of early maize inflorescence development

scientific article published on 06 July 2020

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.

scientific article published on 23 June 2017

Training Population Optimization for Genomic Selection in Miscanthus

scientific article published on 26 May 2020

ZEAXANTHIN EPOXIDASE Activity Potentiates Carotenoid Degradation in Maturing Seed

scientific article published on 6 May 2016

mGWAS Uncovers Gln-Glucosinolate Seed-Specific Interaction and its Role in Metabolic Homeostasis

scientific article published on 21 April 2020

polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

scientific article published on 07 March 2019

simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes

scientific article published on 31 October 2020

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