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List of works by Athena A Schepmoes

A comprehensive collection of systems biology data characterizing the host response to viral infection.

scientific article

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses

scientific article

An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.

scientific article

An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells

scientific article

Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry

scientific article published on October 2008

Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests

scientific article

Analytical platform evaluation for quantification of ERG in prostate cancer using protein and mRNA detection methods

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Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

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Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer.

scientific article

Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure

scientific article published on 01 November 2019

Comparison of Chloroflexus aurantiacus strain J-10-fl proteomes of cells grown chemoheterotrophically and photoheterotrophically

scientific article published on 17 January 2012

Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects

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Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes.

scientific article

Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

scientific article published on 01 August 2020

Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues.

scientific article published on 20 July 2017

Detection of head and neck cancer based on longitudinal changes in serum protein abundance

scientific article published on 12 June 2020

Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants

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Distinct cerebrospinal fluid proteomes differentiate post-treatment lyme disease from chronic fatigue syndrome

scientific article

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods

scientific article

Endogenous 3,4-dihydroxyphenylalanine and dopaquinone modifications on protein tyrosine: links to mitochondrially derived oxidative stress via hydroxyl radical

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Establishing the proteome of normal human cerebrospinal fluid

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Exploratory study reveals far reaching systemic and cellular effects of verapamil treatment in subjects with type 1 diabetes

scientific article published on 03 March 2022

Free 25-Hydroxyvitamin D: Impact of Vitamin D Binding Protein Assays on Racial-Genotypic Associations

scientific article published on 23 March 2016

Gray matter is targeted in first-attack multiple sclerosis

scientific article

High and low doses of ionizing radiation induce different secretome profiles in a human skin model

scientific article

Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences

scientific article

Improved methods for the enrichment and analysis of glycated peptides

scientific article published on December 2008

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

scientific article

Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis.

scientific article published on 19 September 2013

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses

scientific article published on 10 May 2016

Mapping the subcellular proteome of Shewanella oneidensis MR-1 using sarkosyl-based fractionation and LC-MS/MS protein identification

scientific article

Microscale depletion of high abundance proteins in human biofluids using IgY14 immunoaffinity resin: analysis of human plasma and cerebrospinal fluid

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N-terminal enrichment: developing a protocol to detect specific proteolytic fragments

scientific article published on December 2009

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

scientific article

Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics

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Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia that Is Associated with Neuroprotection

scientific article published on 19 October 2018

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

scientific article published on 10 April 2020

Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer

scientific article

Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression

scientific article published on 17 May 2020

Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages

scientific article published on 7 August 2006

Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes

scientific article published on 09 April 2008

Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode

scientific article

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

scientific article published on 17 April 2018

Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics

scientific article published on 15 August 2017

Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model

scientific article

Role of CTGF in Sensitivity to Hyperthermia in Ovarian and Uterine Cancers.

scientific article

Serum Proteome Profiles in Stricturing Crohn's Disease: A Pilot Study

scientific article published in August 2015

Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes

scientific article published on 31 December 2012

Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer

scientific article published on 19 July 2017

Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion

scientific article published on 13 June 2013

Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery

scientific article published on 13 March 2020

Viral afterlife: SARS-CoV-2 as a reservoir of immunomimetic peptides that reassemble into proinflammatory supramolecular complexes

scientific article published on 2 February 2024

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