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List of works by Asaph Aharoni

"La Vie en Rose": Biosynthesis, Sources, and Applications of Betalain Pigments

scientific article published on 25 October 2017

'Hijacking' core metabolism: a new panache for the evolution of steroidal glycoalkaloids structural diversity

scientific article published on 21 May 2020

A Complete Pipeline for Generating a High-Resolution LC-MS-Based Reference Mass Spectra Library

scientific article published on 01 January 2018

A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning

scientific article published on 12 February 2019

A Metabolic Gene Cluster in the Wheat W1 and the Barley Cer-cqu Loci Determines β-Diketone Biosynthesis and Glaucousness.

scientific article published on 25 May 2016

A Multilevel Study of Melon Fruit Reticulation Provides Insight into Skin Ligno-Suberization Hallmarks

scientific article published on 30 January 2019

A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution

scientific article published on 13 August 2019

A hairy-root transformation protocol for Trigonella foenum-graecum L. as a tool for metabolic engineering and specialised metabolite pathway elucidation

scientific article published on 03 July 2020

ABA homeostasis and long-distance translocation are redundantly regulated by ABCG ABA importers

scientific article published on 20 October 2021

ABC-type transporters and cuticle assembly: Linking function to polarity in epidermis cells

scientific article published on October 2008

AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening

scientific article

Advances and future directions in betalain metabolic engineering

scientific article published on 11 July 2019

Altered metabolite accumulation in tomato fruits by coexpressing a feedback-insensitive AroG and the PhODO1 MYB-type transcription factor

scientific article published on 17 May 2016

An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato

scientific article

An orange ripening mutant links plastid NAD(P)H dehydrogenase complex activity to central and specialized metabolism during tomato fruit maturation

scientific article published on 22 June 2010

Analysis of steroidal alkaloids and saponins in Solanaceae plant extracts using UPLC-qTOF mass spectrometry

scientific article published in January 2014

Analysis of wild tomato introgression lines elucidates the genetic basis of transcriptome and metabolome variation underlying fruit traits and pathogen response

scientific article published on 28 September 2020

Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod

scientific article published on 05 March 2019

Arabidopsis HSP70-16 is required for flower opening under normal or mild heat stress temperatures

scientific article published on 10 December 2018

Arabidopsis thaliana plants with different levels of aliphatic- and indolyl-glucosinolates affect host selection and performance of Bemisia tabaci

scientific article published on 6 November 2013

Assimilation of 'omics' strategies to study the cuticle layer and suberin lamellae in plants

scientific article published on 12 October 2017

Auxin Response Factor SlARF2 Is an Essential Component of the Regulatory Mechanism Controlling Fruit Ripening in Tomato

scientific article published on 30 December 2015

Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP

scientific article published on 24 October 2018

Cell type‐specific transcriptional profiling: implications for metabolite profiling ⬇️

scientific article published on April 1, 2012

Chance and pleiotropy dominate genetic diversity in complex bacterial environments

scientific article published on 01 April 2019

Cinnamate metabolism in ripening fruit. Characterization of a UDP-glucose:cinnamate glucosyltransferase from strawberry.

scientific article published on 27 January 2006

Circadian Clock Control by Polyamine Levels through a Mechanism that Declines with Age.

scientific article published on 6 October 2015

CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool

scientific article published in January 2015

Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

scientific article published on 24 March 2020

Composition of cuticular waxes coating flag leaf blades and peduncles of Triticum aestivum cv. Bethlehem

scientific article

Computational identification of three-way junctions in folded RNAs: a case study in Arabidopsis.

scientific article

Corrigendum: Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism

scientific article published on 12 June 2017

DLEMMA-MS-Imaging for Identification of Spatially Localized Metabolites and Metabolic Network Map Reconstruction

scientific article published on 16 August 2018

DNA microarrays for functional plant genomics

scientific article published on 01 January 2002

Developmental programs interact with ABA to coordinate root suberization in Arabidopsis

scientific article published on 09 July 2020

Discovery of New Modules in Metabolic Biology Using ChemoMetabolomics ⬇️

scientific article published on 06 September 2012

Dual labeling of metabolites for metabolome analysis (DLEMMA): A new approach for the identification and relative quantification of metabolites by means of dual isotope labeling and liquid chromatography-mass spectrometry

scientific article published in November 2009

Dynamic metabolic reprogramming of steroidal glycol-alkaloid and phenylpropanoid biosynthesis may impart early blight resistance in wild tomato (Solanum arcanum Peralta).

scientific article published on 4 October 2017

Efficient in planta gene targeting in tomato using geminiviral replicons and the CRISPR/Cas9 system.

scientific article published on 18 April 2018

Elucidation of the first committed step in betalain biosynthesis enables the heterologous engineering of betalain pigments in plants

scientific article published on 18 December 2015

Engineered gray mold resistance, antioxidant capacity, and pigmentation in betalain-producing crops and ornamentals

scientific article published on 31 July 2017

Evaluation of Peak Picking Quality in LC−MS Metabolomics Data ⬇️

scientific article published on October 26, 2010

Expression of a bacterial bi-functional chorismate mutase/prephenate dehydratase modulates primary and secondary metabolism associated with aromatic amino acids in Arabidopsis.

scientific article

Expression of a bacterial feedback‐insensitive 3‐deoxy‐d‐arabino‐heptulosonate 7‐phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism ⬇️

scientific article published on February 1, 2012

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

scientific article published on 28 January 2011

Forecasting COVID-19 pandemic Severity in Asia

scientific article published on 18 May 2020

Fruit-surface flavonoid accumulation in tomato is controlled by a SlMYB12-regulated transcriptional network

scientific article

Functional characterization of enzymes forming volatile esters from strawberry and banana

scientific article published in August 2004

GAME9 regulates the biosynthesis of steroidal alkaloids and upstream isoprenoids in the plant mevalonate pathway.

scientific article published on 15 February 2016

GLYCOALKALOID METABOLISM1 is required for steroidal alkaloid glycosylation and prevention of phytotoxicity in tomato

scientific article published on 16 December 2011

Gain and loss of fruit flavor compounds produced by wild and cultivated strawberry species

scientific article (publication date: November 2004)

Gene expression analysis of strawberry achene and receptacle maturation using DNA microarrays

scientific article

Gene expression and metabolism in tomato fruit surface tissues

scientific article published on 25 April 2008

Generalized logistic growth modeling of the COVID-19 pandemic in Asia

scientific article published on 24 July 2020

Genetic control over silica deposition in wheat awns

scientific article published on 24 April 2010

Genetic engineering of terpenoid metabolism attracts bodyguards to Arabidopsis

scientific article published in September 2005

Genetics of Flavonoid, Carotenoid, and Chlorophyll Pigments in Melon Fruit Rinds ⬇️

scientific article published on October 13, 2010

Genome investigation suggests MdSHN3, an APETALA2-domain transcription factor gene, to be a positive regulator of apple fruit cuticle formation and an inhibitor of russet development.

scientific article published on 28 July 2015

Glycosylation of N-Hydroxy-Pipecolic Acid Equilibrates between Systemic Acquired Resistance Response and Plant Growth

scientific article published on 30 December 2020

High Mass Resolution, Spatial Metabolite Mapping Enhances the Current Plant Gene and Pathway Discovery Toolbox

scientific article published on 12 July 2020

High-resolution measurements in plant biology

article

High-resolution metabolic mapping of cell types in plant roots

scientific article published on 8 March 2013

Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene.

scholarly article

In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids

scientific article published on 04 February 2019

In vitro microbiotic fermentation causes an extensive metabolite turnover of rye bran phytochemicals.

scientific article

Indole Derivatives Maintain the Status Quo Between Beneficial Biofilms and Their Plant Hosts

scientific article published on 02 July 2019

Insights into Tissue-specific Specialized Metabolism in Tieguanyin Tea Cultivar by Untargeted Metabolomics

scientific article published on 21 July 2018

Integration of Plant Metabolomics Data with Metabolic Networks: Progresses and Challenges

scientific article published on 01 January 2018

JA-Ile signalling in Solanum nigrum is not required for defence responses in nature

scientific article published on 21 September 2011

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

scientific article

Label-free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development.

scientific article published on 23 January 2017

Live cyanobacteria produce photocurrent and hydrogen using both the respiratory and photosynthetic systems.

scientific article

Live imaging of root-bacteria interactions in a microfluidics setup

scientific article published on 27 March 2017

MYB107 and MYB9 Homologs Regulate Suberin Deposition in Angiosperms.

scientific article published on 7 September 2016

Mapping the diatom redox-sensitive proteome provides insight into response to nitrogen stress in the marine environment

scientific article published on 03 February 2014

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

scientific article published in 2021

Metabolic Engineering of the Phenylpropanoid and Its Primary, Precursor Pathway to Enhance the Flavor of Fruits and the Aroma of Flowers

scientific article published on 27 November 2015

Metabolic Flexibility Underpins Growth Capabilities of the Fastest Growing Alga.

scientific article published on 03 August 2017

Metabolic engineering of the plant primary–secondary metabolism interface ⬇️

scientific article published on 06 December 2010

Metabolic networking in Brunfelsia calycina petals after flower opening

scientific article published on 4 March 2010

Metabolomics should be deployed in the identification and characterization of gene-edited crops

scientific article published on 10 January 2020

Mining Plants for Bacterial Quorum Sensing Modulators.

scientific article

Miso: an R package for multiple isotope labeling assisted metabolomics data analysis

scientific article published on 01 September 2019

More than Pictures: When MS Imaging Meets Histology

scientific article published on 4 May 2016

NMR and UPLC-qTOF-MS/MS characterisation of novel phenylethanol derivatives of phenylpropanoid glucosides from the leaves of strawberry (Fragaria x ananassa cv. Jonsok).

scientific article published in September 2009

Network-based prediction of metabolic enzymes' subcellular localization

scientific article published in June 2009

Non-targeted analysis of spatial metabolite composition in strawberry (Fragariaxananassa) flowers

scientific article

Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry

scientific article

Novel insight into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climacteric fruit.

scientific article

Orchestration of thiamin biosynthesis and central metabolism by combined action of the thiamin pyrophosphate riboswitch and the circadian clock in Arabidopsis

scientific article published on 22 January 2013

Overexpression of AtSHN1/WIN1 provokes unique defense responses

scientific article

Pan-Genomic Illumination of Tomato Identifies Novel Gene-Trait Interactions

scientific article published on 29 August 2019

Pathogen and pest responses are altered in GLYCOALKALOID METABOLISM4 RNAi Solanum tuberosum

scientific article published on 08 August 2017

Pathways to defense metabolites and evading fruit bitterness in genus Solanum evolved through 2-oxoglutarate-dependent dioxygenases

scientific article published on 14 November 2019

Persistent microbiome alterations modulate the rate of post-dieting weight regain

scientific article

Phytobiome metabolism: beneficial soil microbes steer crop plants' secondary metabolism

scientific article published on 13 May 2019

Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism. ⬇️

scientific article published on 22 December 2016

Plant terpenoid metabolism co-opts a component of the cell wall biosynthesis machinery

scientific article published on 18 May 2020

Qualitative Characterization of Benzoxazinoid Derivatives in Whole Grain Rye and Wheat by LC-MS Metabolite Profiling ⬇️

scientific article published on 07 January 2011

Recommendations for reporting metabolite data

article by Alisdair R Fernie et al published July 2011 in The Plant Cell

Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development

scientific article

Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity ⬇️

scientific article published on December 19, 2011

Redirection of flavonoid biosynthesis through the down-regulation of an anthocyanidin glucosyltransferase in ripening strawberry fruit

scientific article

Repression of CYSTATHIONINE γ-SYNTHASE in Seeds Recruits the S-Methylmethionine Cycle.

scientific article published on 23 May 2017

Reverse genetics of floral scent: application of tobacco rattle virus-based gene silencing in Petunia

scientific article

Rewiring Host Lipid Metabolism by Large Viruses Determines the Fate of Emiliania huxleyi, a Bloom-Forming Alga in the Ocean

scientific article published on 10 June 2014

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

scientific article published on 03 February 2020

Riboswitch-dependent gene regulation and its evolution in the plant kingdom

scientific article

SEEDSTICK is a master regulator of development and metabolism in the Arabidopsis seed coat

scientific article (publication date: December 2014)

SHINE transcription factors act redundantly to pattern the archetypal surface of Arabidopsis flower organs

scientific article

SUBERMAN regulates developmental suberization of the Arabidopsis root endodermis

scientific article published on 06 February 2020

Sample Preparation for Mass Spectrometry Imaging of Plant Tissues: A Review

scientific article

Scratching the surface: genetic regulation of cuticle assembly in fleshy fruit

scientific article

Short-chain dehydrogenase/reductase governs steroidal specialized metabolites structural diversity and toxicity in the genus Solanum

scientific article published on 21 May 2018

Silicon promotes cytokinin biosynthesis and delays senescence in Arabidopsis and Sorghum.

scientific article published on 19 January 2017

Small molecules below-ground: the role of specialized metabolites in the rhizosphere

scientific article published on 23 March 2017

Small molecules that interact with RNA: riboswitch-based gene control and its involvement in metabolic regulation in plants and algae

scientific article

Small molecules: from structural diversity to signalling and regulatory roles

scientific article

Solanum pennellii backcross inbred lines (BILs) link small genomic bins with tomato traits.

scientific article published on 28 April 2016

Sortin1-hypersensitive mutants link vacuolar-trafficking defects and flavonoid metabolism in Arabidopsis vegetative tissues.

scientific article published in February 2011

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

scientific article

Stilbene synthase gene transfer caused alterations in the phenylpropanoid metabolism of transgenic strawberry (Fragaria x ananassa)

scientific article published on January 2009

Switching the light on plant riboswitches

scientific article

TOMATO AGAMOUS-LIKE 1 is a component of the fruit ripening regulatory network

scientific article published on December 2009

Terpenoid metabolism in wild-type and transgenic Arabidopsis plants

scientific article published on 20 November 2003

The 'TranSeq' 3'-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes

scientific article published on 29 July 2018

The Arabidopsis ABCG13 transporter is required for flower cuticle secretion and patterning of the petal epidermis

scientific article published on 14 January 2011

The Arabidopsis DCR encoding a soluble BAHD acyltransferase is required for cutin polyester formation and seed hydration properties

scientific article

The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion

scientific article published on 19 October 2007

The Arabidopsis DSO/ABCG11 transporter affects cutin metabolism in reproductive organs and suberin in roots

scientific article published on 24 December 2009

The PH gene determines fruit acidity and contributes to the evolution of sweet melons

scientific article published on 5 June 2014

The PhytoClust tool for metabolic gene clusters discovery in plant genomes

scientific article published on 9 May 2017

The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis

scientific article

The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.

scientific article published on 17 November 2017

The Tomato MIXTA-Like Transcription Factor Coordinates Fruit Epidermis Conical Cell Development and Cuticular Lipid Biosynthesis and Assembly.

scientific article published on 6 October 2015

The WEIZMASS spectral library for high-confidence metabolite identification

scientific article

The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis

scientific article

The challenges of cellular compartmentalization in plant metabolic engineering.

scientific article published on 12 December 2012

The genome of woodland strawberry (Fragaria vesca)

scientific article

The legwd mutant uncovers the role of starch phosphorylation in pollen development and germination in tomato

scientific article published on 30 September 2008

The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice

scientific article published on 7 August 2017

The tomato SlSHINE3 transcription factor regulates fruit cuticle formation and epidermal patterning

scientific article published on 3 December 2012

The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators

scientific article published on October 2008

The transcription factor SlSHINE3 modulates defense responses in tomato plants

scientific article published on 13 August 2013

Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation

scientific article

Tissue-specific organic acid metabolism in reproductive and non-reproductive parts of the fig fruit is partially induced by pollination

scientific article published on 27 March 2019

Tomato fruits expressing a bacterial feedback-insensitive 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway possess enhanced levels of multiple specialized metabolites and upgraded aroma

scientific article published on 04 September 2013

Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa

scientific article published on 13 December 2017

UPLC-MS-based metabolite analysis in tomato.

scientific article published in January 2012

Uncovering DELLA-Independent Gibberellin Responses by Characterizing New Tomato procera Mutants

scientific article published on 2 June 2015

Uncovering tomato quantitative trait loci and candidate genes for fruit cuticular lipid composition using the Solanum pennellii introgression line population.

scientific article

Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis

scientific article

Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol.

scientific article

Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga

scientific article published on 16 March 2016

Volatile science? Metabolic engineering of terpenoids in plants

scientific article

WRKY1 acts as a key component improving resistance against Alternaria solani in wild tomato, Solanum arcanum Peralta

scientific article published on 29 January 2018

pc8.1, a major QTL for pigment content in pepper fruit, is associated with variation in plastid compartment size ⬇️

scientific article published on October 11, 2011

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