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List of works by Dagmar Iber

A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development

scientific article

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

scientific article published on 16 September 2020

A computational analysis of the dynamic roles of talin, Dok1, and PIPKI for integrin activation

scientific article

A computational analysis of the impact of the transient genetic imbalance on compartmentalized gene expression during sporulation in Bacillus subtilis.

scientific article published on 19 May 2006

A mathematical model for germinal centre kinetics and affinity maturation.

scientific article published in November 2002

A quantitative analysis of growth control in the Drosophila eye disc

scientific article published on 10 March 2016

A quantitative study of the benefits of co-regulation using the spoIIA operon as an example

scientific article published on 22 August 2006

An Unbiased Analysis of Candidate Mechanisms for the Regulation of Drosophila Wing Disc Growth

scientific article published on 20 December 2016

An analysis of B cell selection mechanisms in germinal centers.

scientific article published on 17 May 2006

An interplay of geometry and signaling enables robust lung branching morphogenesis.

scientific article published on 30 October 2014

Analyzing and constraining signaling networks: parameter estimation for the user

scientific article published on January 2012

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs

scientific article published on 18 June 2014

Axis Patterning by BMPs: Cnidarian Network Reveals Evolutionary Constraints.

scientific article published on 11 March 2015

Branch mode selection during early lung development

scientific article

Cell-based simulations of biased epithelial lung growth

scientific article published on 13 December 2019

Computational modelling of bovine ovarian follicle development

scientific article

Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.

scientific article published in October 2017

Digit patterning during limb development as a result of the BMP-receptor interaction ⬇️

scientific article (publication date: 2012)

Dynamic scaling of morphogen gradients on growing domains

scientific article published on 8 October 2014

ECCB 2012: The 11th European Conference on Computational Biology.

scientific article

Enhanced cellular sensitivity from partitioning the integrin receptors into multiple clusters

scientific article published on 3 January 2013

Feedback, receptor clustering, and receptor restriction to single cells yield large Turing spaces for ligand-receptor-based Turing models ⬇️

scientific article published on 22 August 2014

From single cells to multicellular organisms - a quantitative analysis ⬇️

doctoral thesis by Dagmar Iber

Generation of 3D Soluble Signal Gradients in Cell-Laden Hydrogels Using Passive Diffusion

scientific article published on 14 November 2018

Global optimization using Gaussian processes to estimate biological parameters from image data

scientific article published on 07 December 2018

Growth and size control during development.

scientific article

Growth control in the Drosophila eye disc by the cytokine Unpaired.

scientific article published in March 2017

How do digits emerge? - mathematical models of limb development

scientific article published on March 2014

Id4 Downstream of Notch2 Maintains Neural Stem Cell Quiescence in the Adult Hippocampus

scientific article published on 01 August 2019

Image-based modeling of kidney branching morphogenesis reveals GDNF-RET based Turing-type mechanism and pattern-modulating WNT11 feedback

scientific article published on 16 January 2019

Image-based modelling of organogenesis

scientific article published on 27 October 2015

Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation in Bacillus subtilis as a Test Case

scientific article

Integrin activation--the importance of a positive feedback.

scientific article published on 13 May 2006

Inter-dependent tissue growth and Turing patterning in a model for long bone development

scientific article published on 08 October 2013

Kidney branching morphogenesis under the control of a ligand-receptor-based Turing mechanism

scientific article published on 17 June 2013

LBIBCell: a cell-based simulation environment for morphogenetic problems ⬇️

scientific article

MOCCASIN: converting MATLAB ODE models to SBML.

scientific article published on 9 February 2016

Making sense-data-based simulations of vertebrate limb development

scientific article

Morphological study of embryonic Chd8+/− mouse brains using light-sheet microscopy

scientific article published in 2021

Plasticity of TGF-β signaling

scientific article

Prediction stability in a data-based, mechanistic model of σF regulation during sporulation in Bacillus subtilis

scientific article

Predictive models for cellular signaling networks

scientific article published on January 2012

Publisher Correction: Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis

scientific article published on 01 September 2019

Read-Out of Dynamic Morphogen Gradients on Growing Domains

scientific article published on 24 November 2015

SHH propagates distal limb bud development by enhancing CYP26B1-mediated retinoic acid clearance via AER-FGF signalling

scientific article

Simulating tissue morphogenesis and signaling

scientific article published in January 2015

Simulation of Morphogen and Tissue Dynamics

article

Simulations demonstrate a simple network to be sufficient to control branch point selection, smooth muscle and vasculature formation during lung branching morphogenesis

scientific article published on 27 June 2012

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes

scientific article

Studies of morphogens: keep calm and carry on.

scientific article published on October 2013

Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis

scientific article published on 29 July 2019

Tead transcription factors differentially regulate cortical development

scientific article published on 13 March 2020

The control of branching morphogenesis

scientific article published on 04 September 2013

The mechanism of cell differentiation in Bacillus subtilis.

scientific article published in May 2006

The mechanism of sudden stripe formation during dorso-ventral patterning in Drosophila.

scientific article published on 15 November 2006

Time-lapse and cleared imaging of mouse embryonic lung explants to study three-dimensional cell morphology and topology dynamics

scientific article published in 2023

Travelling waves in somitogenesis: Collective cellular properties emerge from time-delayed juxtacrine oscillation coupling

scientific article published on 24 April 2018

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