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List of works by David Miller

A "neural" enzyme in nonbilaterian animals and algae: preneural origins for peptidylglycine α-amidating monooxygenase.

scientific article published on 10 April 2012

A 'fair go' for coral hybridization

scientific article published in April 2003

A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination

scientific article

A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data

scientific article published in 2010

A genomic view of the reef-building coral Porites lutea and its microbial symbionts

scientific article published on 23 September 2019

A simple plan--cnidarians and the origins of developmental mechanisms

scientific article published in August 2004

An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives

scientific article published on 26 August 2020

Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals)

scientific article

Animal evolution: Trichoplax, trees, and taxonomic turmoil

scientific article published on 01 November 2008

Animal evolution: the enigmatic phylum placozoa revisited

scientific article

Apparent involvement of a beta1 type integrin in coral fertilization

scientific article published on 13 August 2007

Archetypal ‘elkhorn’ coral discovered in the Pacific Ocean

scientific article published in 2010

Axial patterning and diversification in the cnidaria predate the Hox system

scientific article published on 23 March 2006

Back to the Basics: Cnidarians Start to Fire

scientific article published on 29 December 2016

Biogeography, reproductive biology and phylogenetic divergence within the Fungiidae (mushroom corals)

scientific article published on 15 July 2021

Cnidarians and ancestral genetic complexity in the animal kingdom

scientific article

Comparative analysis of prothrombin activators from the venom of Australian elapids

scientific article published on 01 June 2005

Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages

scientific article published on 02 November 2018

Comparative transcriptomic analyses of Chromera and Symbiodiniaceae

scientific article published on 25 May 2020

Components of both major axial patterning systems of the Bilateria are differentially expressed along the primary axis of a 'radiate' animal, the anthozoan cnidarian Acropora millepora

scientific article published on 4 August 2006

Coral development: from classical embryology to molecular control.

scientific article

Coral emx-Am can substitute for Drosophila empty spiracles function in head, but not brain development

scientific article published on 4 January 2010

Coral genomics and transcriptomics — Ushering in a new era in coral biology

scientific article published on 06 September 2011

Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata

Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata

scientific article

Coral thermal tolerance: tuning gene expression to resist thermal stress

scientific article

Correction: Coral Thermal Tolerance: Tuning Gene Expression to Resist Thermal Stress

Correction: Some Rare Indo-Pacific Coral Species Are Probable Hybrids

scientific article published in PLoS ONE

Cryptic complexity captured: the Nematostella genome reveals its secrets

scientific article published on 3 December 2007

DNA‐binding characteristics of cnidarian Pax‐C and Pax‐B proteins in vivo and in vitro: No simple relationship with the Pax‐6 and Pax‐2/5/8 classes ⬇️

scientific article published on October 15, 2003

Deciphering the nature of the coral-Chromera association

scientific article published on 10 January 2018

Defining the Origins of the NOD-Like Receptor System at the Base of Animal Evolution

scientific article published on 23 December 2010

Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia)

article published in 2012

Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora

scientific article

Differential gene expression at coral settlement and metamorphosis--a subtractive hybridization study

scientific article

Diverse coral reef invertebrates exhibit patterns of phylosymbiosis

scientific article published on 22 May 2020

Diversity and evolution of coral fluorescent proteins

scientific article

Dual RNA-seq analyses of a coral and its native symbiont during the establishment of symbiosis

scientific article published on 27 August 2020

EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates

scientific article published on 01 December 2003

Early eukaryotic origins and metazoan elaboration of MAPR family proteins

scientific article published on 08 April 2020

Erratum: Publisher Correction: genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

scientific article published on 23 August 2018

Evolutionary analyses of caspase-8 and its paralogs: Deep origins of the apoptotic signaling pathways

scientific article published on 22 May 2015

Expression of putative immune response genes during early ontogeny in the coral Acropora millepora

scientific article

Expression of the neuropeptides RFamide and LWamide during development of the coral Acropora millepora in relation to settlement and metamorphosis

scientific article published on 03 December 2018

Finding Nemo's Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula

article

Finding Nemo’s Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula

article

Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora.

scientific article published on 16 January 2016

Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts

scientific article published on 27 November 2020

High Levels of Genetic Variability in an Isolated Colony of Rock-wallabies (Petrogale assimilis): Evidence from Three Classes of Molecular Markers

scientific article published in 1997

Host Coenzyme Q Redox State Is an Early Biomarker of Thermal Stress in the Coral Acropora millepora

scientific article published on October 2015

Host-Microbe Coevolution: Applying Evidence from Model Systems to Complex Marine Invertebrate Holobionts

article

How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans

scientific article

Identification and Characterization of a Peptide from the Stony Coral Heliofungia actiniformis

scientific article published on 09 November 2020

Identification of fast-evolving genes in the scleractinian coral Acropora using comparative EST analysis

scientific article

Implications of cnidarian gene expression patterns for the origins of bilaterality is the glass half full or half empty? ⬇️

scientific article published on July 9, 2007

In vitro fertilization efficiency in coral Acropora digitifera

scientific article published on 28 April 2009

Localized expression of a dpp/BMP2/4 ortholog in a coral embryo

scientific article

Loss and Gain of Group I Introns in the Mitochondrial Cox1 Gene of the Scleractinia (Cnidaria; Anthozoa)

scientific article published on 04 May 2017

Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians

scientific article

Major cellular and physiological impacts of ocean acidification on a reef building coral

scientific article (publication date: 2012)

Microarray analysis identifies candidate genes for key roles in coral development

scientific article

Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora

scientific article

Mitochondrial genome rearrangements in the scleractinia/corallimorpharia complex: implications for coral phylogeny

scientific article (publication date: May 2014)

Molecular phylogenetics of geographically restricted Acropora species: Implications for threatened species conservation ⬇️

scientific article published on July 10, 2013

Molecular techniques and their limitations shape our view of the holobiont

scientific article published on 16 July 2019

Monophyletic origin ofCaryophyllia(Scleractinia, Caryophylliidae), with descriptions of six new species

scientific article published in 2010

Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus

scientific article published on 9 June 2016

Never Ending Analysis of a Century Old Evolutionary Debate: “Unringing” the Urmetazoon Bell

article published in 2016

New tricks with old genes: the genetic bases of novel cnidarian traits.

scientific article published in February 2010

Patterns of gene expression in a scleractinian coral undergoing natural bleaching

scientific article

Phylogenomics reveals an anomalous distribution of USP genes in metazoans

scientific article published on 21 July 2010

Phylogeny: the continuing classificatory conundrum of chaetognaths

scientific article published on August 2006

Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora

scientific article published on 30 May 2003

Putting placozoans on the (phylogeographic) map

scientific article published on 01 June 2010

Rapid adaptive responses to climate change in corals

article

Research priorities for the sustainability of coral-rich western Pacific seascapes

Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches

scientific article published on 01 March 2019

Sequence and expression of four coral G protein-coupled receptors distinct from all classifiable members of the rhodopsin family

scientific article published on 17 November 2006

Simultaneous determination of coenzyme Q and plastoquinone redox states in the coral–Symbiodinium symbiosis during thermally induced bleaching

article published in 2014

Some rare Indo-Pacific coral species are probable hybrids

scientific article (publication date: 24 September 2008)

Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa

scientific article

Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals

scientific article published on August 2002

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

article published in 2018

Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora

scientific article published on 09 February 2005

Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts

scientific article published on 01 June 2021

The "naked coral" hypothesis revisited--evidence for and against scleractinian monophyly

scientific article (publication date: 2014)

The ETS/IGS Region in a Lower Animal, the Seawhip, Junceella fragilis (Cnidaria: Anthozoa: Octocorallia): Compactness, Low Variation and Apparent Conservation of a Pre-rRNA Processing Signal with Fungi ⬇️

scientific article published in April 2000

The Neuronal Calcium Sensor protein Acrocalcin: a potential target of calmodulin regulation during development in the coral Acropora millepora

scientific article

The Role of Hybridization in the Evolution of Reef Corals

scientific article published on 17 August 2006

The Whole-Genome Sequence of the Coral Acropora millepora

scientific article published on 01 May 2019

The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants

scientific article

The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals

scientific article (publication date: 28 October 2011)

The apoptotic initiator caspase-8: its functional ubiquity and genetic diversity during animal evolution.

scientific article published on 8 September 2014

The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations.

scientific article published on 30 August 2012

The evolution of immunity: a low-life perspective

scientific article published on 12 September 2007

The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis

article

The gene complement of the ancestral bilaterian - was Urbilateria a monster?

scientific article

The innate immune repertoire in cnidaria--ancestral complexity and stochastic gene loss.

scientific article published in January 2007

The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress.

scientific article

The mitochondrial genome of Acropora tenuis (Cnidaria; Scleractinia) contains a large group I intron and a candidate control region

scientific article published on 01 July 2002

The organizer in evolution-gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora

scientific article published on 16 January 2015

The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling

scientific article published on 12 June 2013

Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native species ⬇️

scientific article published on 27 March 2019

Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals

scientific article published on 14 August 2017

Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress

scientific article published on 20 February 2019

Understanding the evolution of multicellularity: insights from basal metazoans

scientific article

Unexpected diversity of cnidarian integrins: expression during coral gastrulation

scientific article

Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems.

scientific article

Urbanization comprehensively impairs biological rhythms in coral holobionts

scientific article published in 2022

Using the Acropora digitifera genome to understand coral responses to environmental change ⬇️

scientific article published on July 24, 2011

What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins

scientific article published on 20 March 2020

What the Cnidaria Tell Us about Pax Gene Evolution ⬇️

scientific article published in October 1999

Zooxanthellamide D, a polyhydroxy polyene amide from a marine dinoflagellate, and chemotaxonomic perspective of the Symbiodinium polyols

scientific article published on 22 February 2007

snail expression during embryonic development of the coral Acropora: blurring the diploblast/triploblast divide?

scientific article published on 17 March 2004

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