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List of works by Zhiping Weng

A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies

scientific article published on 01 May 2021

A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

scientific article published on 22 January 2020

ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes.

scientific article published on 3 February 2017

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

scholarly article

Author Correction: Perspectives on ENCODE

scholarly article

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

Cell-specific histone modification maps in the human frontal lobe link schizophrenia risk to the neuronal epigenome

scientific article published on 23 July 2018

Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia

scientific article published on 17 October 2019

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Defining functional DNA elements in the human genome

scientific article

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale

scientific article published on 24 August 2020

Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans

scientific article published on 23 December 2019

Evolutionary constraint and innovation across hundreds of placental mammals

scientific article published on 28 April 2023

Expanded encyclopaedias of DNA elements in the human and mouse genomes

scientific article published on 29 July 2020

Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function

scientific article published on 14 August 2019

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrated miRNA-/mRNA-Seq of the Habenulo-Interpeduncular Circuit During Acute Nicotine Withdrawal

scientific article published on 21 January 2020

Integrating gene annotation with orthology inference at scale ⬇️

scientific article published on 28 April 2023

Neuron-specific signatures in the chromosomal connectome associated with schizophrenia risk

scientific article published on 01 December 2018

Performance of ZDOCK and IRAD in CAPRI rounds 39-45

scientific article published on 29 January 2020

Principles of regulatory information conservation between mouse and human

scientific article

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease

scientific article published on August 2014

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The evolutionarily conserved piRNA-producing locus pi6 is required for male mouse fertility

scientific article published on 29 June 2020

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes

scientific article

The temporal landscape of recursive splicing during Pol II transcription elongation in human cells

scientific article published on 27 August 2018

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

scientific article published on 28 April 2023

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