List of works - Somnath Datta

<b>SeqNet</b>: An <i>R</i> Package for Generating Gene-Gene Networks and Simulating RNA-Seq Data

scientific article published on 09 July 2021

A Bayesian approach for analyzing zero-inflated clustered count data with dispersion

scientific article published on 6 November 2017

A Combined PLS and Negative Binomial Regression Model for Inferring Association Networks from Next-generation Sequencing Count Data

scientific article

A General Class of Signed Rank Tests for Clustered Data when the Cluster Size is Potentially Informative

scientific article

A log rank test for clustered data with informative within-cluster group size

scientific article published on 12 July 2018

A longitudinal Bayesian mixed effects model with hurdle Conway-Maxwell-Poisson distribution

scientific article published on 23 December 2020

A probability based method for selecting the optimal personalized treatment from multiple treatments.

scientific article published in January 2017

A signed-rank test for clustered data

scientific article

A statistical framework for differential network analysis from microarray data

scientific article

An adaptive optimal ensemble classifier via bagging and rank aggregation with applications to high dimensional data

scientific article

An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments

scientific article published in January 2004

Analyzing clustered count data with a cluster specific random effect zero-inflated Conway-Maxwell-Poisson distribution.

scientific article published on 8 April 2017

Blood pressure signature genes and blood pressure response to thiazide diuretics: results from the PEAR and PEAR-2 studies.

scientific article

Comparisons and validation of statistical clustering techniques for microarray gene expression data

scientific article

Empirical Bayes screening of many p-values with applications to microarray studies

scientific article published on 2 February 2005

Estimation of Stage Occupation Probabilities in Multistage Models

Estimation of average treatment effects among multiple treatment groups by using an ensemble approach

scientific article published on 02 April 2019

Estimation of integrated transition hazards and stage occupation probabilities for non-Markov systems under dependent censoring

scientific article published on 01 December 2002

Evaluation of clustering algorithms for gene expression data

scientific article

Exploring the importance of cancer pathways by meta-analysis of differential protein expression networks in three different cancers

scientific article published on 20 December 2016

Flexible semi-parametric regression of state occupational probabilities in a multistate model with right-censored data

scientific article

Incorporation of biological knowledge into distance for clustering genes

scientific article published on 10 April 2007

Inference on the marginal distribution of clustered data with informative cluster size

scientific article

Inter-platform concordance of gene expression data for the prediction of chemical mode of action

scientific article (publication date: 20 December 2016)

Kaplan–Meier representation of competing risk estimates

article

Marginal Analyses of Multistage Data

Marginal analyses of clustered data when cluster size is informative

scientific article

Marginal estimation for multi‐stage models: waiting time distributions and competing risks analyses ⬇️

scientific article published on January 15, 2002

Meta analysis of Chronic Fatigue Syndrome through integration of clinical, gene expression, SNP and proteomic data

scientific article

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

scientific article

Multisample adjusted U-statistics that account for confounding covariates

Nonparametric estimation of stage occupation probabilities in a multistage model with current status data

scientific article

Nonparametric estimation of waiting time distributions in a Markov model based on current status data

Personalized treatment selection using data from crossover designs with carry-over effects

scientific article published on 21 October 2019

Predicting patient survival from microarray data by accelerated failure time modeling using partial least squares and LASSO.

scientific article

Predicting survival times for neuroblastoma patients using RNA-seq expression profiles.

scientific article published on 30 May 2018

Propensity scores based methods for estimating average treatment effect and average treatment effect among treated: A comparative study

scientific article published on 24 April 2017

Rank-based inference for covariate and group effects in clustered data in presence of informative intra-cluster group size

scientific article published on 19 September 2018

RankAggreg, an R package for weighted rank aggregation

scientific article

Reconstruction of genetic association networks from microarray data: a partial least squares approach

scientific article

Selection of the optimal personalized treatment from multiple treatments with multivariate outcome measures

scientific article published on 06 November 2019

Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens

scientific article

Statistical Analyses of Next Generation Sequence Data: A Partial Overview ⬇️

scientific article published on June 1, 2010

Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies

scientific article published on 11 January 2012

Temporal Prediction of Future State Occupation in a Multistate Model from High-Dimensional Baseline Covariates via Pseudo-Value Regression

scientific article published on 20 December 2016

Tests for informative cluster size using a novel balanced bootstrap scheme

scientific article

Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles.

scientific article published on 22 May 2018

Variance estimation in tests of clustered categorical data with informative cluster size

scientific article published on 08 June 2020

Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.

scientific article

Whole Transcriptome Sequencing Analyses Reveal Molecular Markers of Blood Pressure Response to Thiazide Diuretics

scientific article published on 22 November 2017

dna: An R package for differential network analysis

scientific article

optCluster: An R Package for Determining the Optimal Clustering Algorithm

scientific article

svapls: an R package to correct for hidden factors of variability in gene expression studies ⬇️

scientific article published on July 24, 2013

List of works by Somnath Datta

<b>SeqNet</b>: An <i>R</i> Package for Generating Gene-Gene Networks and Simulating RNA-Seq Data

A Bayesian approach for analyzing zero-inflated clustered count data with dispersion

A Combined PLS and Negative Binomial Regression Model for Inferring Association Networks from Next-generation Sequencing Count Data

A General Class of Signed Rank Tests for Clustered Data when the Cluster Size is Potentially Informative

A log rank test for clustered data with informative within-cluster group size

A longitudinal Bayesian mixed effects model with hurdle Conway-Maxwell-Poisson distribution

A probability based method for selecting the optimal personalized treatment from multiple treatments.

A signed-rank test for clustered data

A statistical framework for differential network analysis from microarray data

An adaptive optimal ensemble classifier via bagging and rank aggregation with applications to high dimensional data

An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments

Analyzing clustered count data with a cluster specific random effect zero-inflated Conway-Maxwell-Poisson distribution.

Blood pressure signature genes and blood pressure response to thiazide diuretics: results from the PEAR and PEAR-2 studies.

Comparisons and validation of statistical clustering techniques for microarray gene expression data

Empirical Bayes screening of many p-values with applications to microarray studies

Estimation of Stage Occupation Probabilities in Multistage Models

Estimation of average treatment effects among multiple treatment groups by using an ensemble approach

Estimation of integrated transition hazards and stage occupation probabilities for non-Markov systems under dependent censoring

Evaluation of clustering algorithms for gene expression data

Exploring the importance of cancer pathways by meta-analysis of differential protein expression networks in three different cancers

Flexible semi-parametric regression of state occupational probabilities in a multistate model with right-censored data

Incorporation of biological knowledge into distance for clustering genes

Inference on the marginal distribution of clustered data with informative cluster size

Inter-platform concordance of gene expression data for the prediction of chemical mode of action

Kaplan–Meier representation of competing risk estimates

Marginal Analyses of Multistage Data

Marginal analyses of clustered data when cluster size is informative

Marginal estimation for multi‐stage models: waiting time distributions and competing risks analyses ⬇️

Meta analysis of Chronic Fatigue Syndrome through integration of clinical, gene expression, SNP and proteomic data

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

Multisample adjusted U-statistics that account for confounding covariates

Nonparametric estimation of stage occupation probabilities in a multistage model with current status data

Nonparametric estimation of waiting time distributions in a Markov model based on current status data

Personalized treatment selection using data from crossover designs with carry-over effects

Predicting patient survival from microarray data by accelerated failure time modeling using partial least squares and LASSO.

Predicting survival times for neuroblastoma patients using RNA-seq expression profiles.

Propensity scores based methods for estimating average treatment effect and average treatment effect among treated: A comparative study

Rank-based inference for covariate and group effects in clustered data in presence of informative intra-cluster group size

RankAggreg, an R package for weighted rank aggregation

Reconstruction of genetic association networks from microarray data: a partial least squares approach

Selection of the optimal personalized treatment from multiple treatments with multivariate outcome measures

Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens

Statistical Analyses of Next Generation Sequence Data: A Partial Overview ⬇️

Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies

Temporal Prediction of Future State Occupation in a Multistate Model from High-Dimensional Baseline Covariates via Pseudo-Value Regression

Tests for informative cluster size using a novel balanced bootstrap scheme

Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles.

Variance estimation in tests of clustered categorical data with informative cluster size

Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.

Whole Transcriptome Sequencing Analyses Reveal Molecular Markers of Blood Pressure Response to Thiazide Diuretics

dna: An R package for differential network analysis

optCluster: An R Package for Determining the Optimal Clustering Algorithm

svapls: an R package to correct for hidden factors of variability in gene expression studies ⬇️