List of works - Silvana Gaudieri

7th drug hypersensitivity meeting: part one.

scientific article

A systematic review of T-cell epitopes in hepatitis B virus: identification, genotypic variation and relevance to antiviral therapeutics.

scientific article published on January 2008

Abacavir-reactive memory T cells are present in drug naïve individuals

scientific article

Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs.

scientific article

Amino acid patterns within short consensus repeats define conserved duplicons shared by genes of the RCA complex

scientific article published on August 2004

Analysis of FOXP3+ regulatory T cells that display apparent viral antigen specificity during chronic hepatitis C virus infection

scientific article

Anti-hepatitis C virus T-cell immunity in the context of multiple exposures to the virus

scientific article published on 24 June 2015

Associations between KIR epitope combinations expressed by HLA-B/-C haplotypes found in an HIV-1 infected study population may influence NK mediated immune responses

scientific article

Biomarkers that reflect immune activation or dysfunction will be important in the management of infectious diseases

scientific article published on 01 April 2011

Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy

scientific article published on 26 July 2010

Comparative genomic analysis, diversity and evolution of two KIR haplotypes A and B.

scientific article published in June 2004

Comparison of HLA allelic imputation programs.

scientific article

Constrained pattern of viral evolution in acute and early HCV infection limits viral plasticity

scientific article

Correction: Analysis of FOXP3+ Regulatory T Cells That Display Apparent Viral Antigen Specificity during Chronic Hepatitis C Virus Infection.

scientific article published on 22 June 2012

Cytomegalovirus (CMV) Epitope-Specific CD4(+) T Cells Are Inflated in HIV(+) CMV(+) Subjects

scientific article published on 2 October 2017

Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV

scientific article published on 10 December 2019

Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure

scientific article

Effect of immune pressure on hepatitis C virus evolution: insights from a single-source outbreak ⬇️

scientific article

Escape of Hepatitis C Virus from Epitope I Neutralization Increases Sensitivity of Other Neutralization Epitopes.

scientific article published on 21 February 2018

Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome.

scientific article

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

scientific article

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China

scientific article published on 11 May 2011

Fibrosing mediastinitis complicating prior histoplasmosis is associated with human leukocyte antigen DQB1*04:02 - a case control study

scientific article published on 5 May 2015

Forensic STRs as potential disease markers: a study of VWA and von Willebrand's Disease

scientific article published on 13 July 2007

Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

scientific article

Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

scientific article published in February 2010

Genetic variations in IL28B and allergic disease in children

scientific article

HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions

scientific article

HLA-B*27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope

scientific article published on 23 August 2013

HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy.

scientific article published in June 2008

Helicobacter pylori adaptation in vivo in response to a high-salt diet

scientific article

Hepatitis C virus drug resistance and immune-driven adaptations: relevance to new antiviral therapy

scientific article

Host genetic determinants of spontaneous hepatitis C clearance

scientific article

Host genetics and viral infections: immunology taught by viruses, virology taught by the immune system

scientific article published on 13 June 2006

IFN-λ and IgE-mediated Allergic Disease: A Potential Future Role? ⬇️

scientific article published on April 1, 2012

IL28B, HLA-C, and KIR variants additively predict response to therapy in chronic hepatitis C virus infection in a European Cohort: a cross-sectional study

scientific article

Impact of host genetics on HIV disease progression and treatment: new conflicts on an ancient battleground

scientific article published in June 2004

In polymorphic genomic regions indels cluster with nucleotide polymorphism: Quantum Genomics

scientific article published in July 2003

Influence of HIV and HCV on T cell antigen presentation and challenges in the development of vaccines

scientific article

Influence of Transmitted Virus on the Host's Immune Response: A Case Study.

scientific article published on 22 May 2017

Influence of host resistance on viral adaptation: hepatitis C virus as a case study

scientific article

Influence of human leukocyte antigen (HLA) alleles and killer cell immunoglobulin-like receptors (KIR) types on heparin-induced thrombocytopenia (HIT).

scientific article

Innate and adaptive immunity shape circulating HCV strains

scientific article published in April 2017

Length variation of CAG/CAA triplet repeats in 50 genes among 16 inbred mouse strains

scientific article

Longitudinal Trends in Western Australian HIV-1 Sequence Diversity and Viral Transmission Networks and Their Influence on Clinical Parameters: 2000-2014.

scientific article

Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV cohort study.

scientific article published on January 2008

Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

scientific article

Mitochondrial DNA cytochrome oxidase I gene: potential for distinction between immature stages of some forensically important fly species (Diptera) in western Australia.

scientific article published in January 2003

Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region

scientific article published on August 2002

Molecular footprints reveal the impact of the protective HLA-A*03 allele in hepatitis C virus infection

scientific article

Naturally occurring dominant drug resistance mutations occur infrequently in the setting of recently acquired hepatitis C.

scientific article

New genetic predictors for abacavir tolerance in HLA-B*57:01 positive individuals

scientific article published on 12 March 2020

New hope for biomarkers in the practice of infectious diseases medicine

scientific article published in January 2014

Pharmacogenetics of antiretroviral therapy: genetic variation of response and toxicity

scientific article published in September 2004

Pharmacogenetics: a practical role in predicting antiretroviral drug toxicity?

scientific article

Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants.

scientific article published on May 2017

Population Level Analysis of Human Immunodeficiency Virus Type 1 Hypermutation and Its Relationship with APOBEC3G and Genetic Variation

Population level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation

scientific article

Predisposition to abacavir hypersensitivity conferred by HLA-B*5701 and a haplotypic Hsp70-Hom variant

scholarly article

Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: relevance to treatment outcome and resistance screening.

scientific article published on 24 May 2016

Reconsideration of blood donation testing strategy for human T-cell lymphotropic virus in Australia.

scientific article published on 27 September 2017

Regulation of KIR3DL3 Expression via Mirna

scientific article published on 09 August 2019

Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection

scientific article

Skewed association of polyfunctional antigen-specific CD8 T cell populations with HLA-B genotype

scholarly article

The Interferon Family as Biomarkers of Disease: Renaissance of the Innate Immune System ⬇️

scientific article published on April 1, 2012

The broad assessment of HCV genotypes 1 and 3 antigenic targets reveals limited cross-reactivity with implications for vaccine design

scientific article

The impact of visa status and Medicare eligibility on people diagnosed with HIV in Western Australia: a qualitative report

scientific article published in November 2012

The role of biomarkers in the prevention of globally important diseases

scientific article published on 01 June 2013

Three adjacent nucleotide changes spanning two residues in SARS-CoV-2 nucleoprotein: possible homologous recombination from the transcription-regulating sequence

scientific article published on 12 April 2020

Tracking Virus-Specific CD4+ T Cells during and after Acute Hepatitis C Virus Infection

scientific article (publication date: 25 July 2007)

Transmitted/Founder Viruses Rapidly Escape from CD8+ T Cell Responses in Acute Hepatitis C Virus Infection

scientific article published on 4 March 2015

Vertebrate species profiling in one step using a single primer.

scientific article

Viral adaptation to host immune responses occurs in chronic hepatitis B virus (HBV) infection, and adaptation is greatest in HBV e antigen-negative disease.

scientific article published on 9 November 2011

List of works by Silvana Gaudieri

7th drug hypersensitivity meeting: part one.

A systematic review of T-cell epitopes in hepatitis B virus: identification, genotypic variation and relevance to antiviral therapeutics.

Abacavir-reactive memory T cells are present in drug naïve individuals

Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs.

Amino acid patterns within short consensus repeats define conserved duplicons shared by genes of the RCA complex

Analysis of FOXP3+ regulatory T cells that display apparent viral antigen specificity during chronic hepatitis C virus infection

Anti-hepatitis C virus T-cell immunity in the context of multiple exposures to the virus

Associations between KIR epitope combinations expressed by HLA-B/-C haplotypes found in an HIV-1 infected study population may influence NK mediated immune responses

Biomarkers that reflect immune activation or dysfunction will be important in the management of infectious diseases

Cellular immune responses to HCV core increase and HCV RNA levels decrease during successful antiretroviral therapy

Comparative genomic analysis, diversity and evolution of two KIR haplotypes A and B.

Comparison of HLA allelic imputation programs.

Constrained pattern of viral evolution in acute and early HCV infection limits viral plasticity

Correction: Analysis of FOXP3+ Regulatory T Cells That Display Apparent Viral Antigen Specificity during Chronic Hepatitis C Virus Infection.

Cytomegalovirus (CMV) Epitope-Specific CD4(+) T Cells Are Inflated in HIV(+) CMV(+) Subjects

Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV

Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure

Effect of immune pressure on hepatitis C virus evolution: insights from a single-source outbreak ⬇️

Escape of Hepatitis C Virus from Epitope I Neutralization Increases Sensitivity of Other Neutralization Epitopes.

Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome.

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection

Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China

Fibrosing mediastinitis complicating prior histoplasmosis is associated with human leukocyte antigen DQB1*04:02 - a case control study

Forensic STRs as potential disease markers: a study of VWA and von Willebrand's Disease

Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

Full-Length Characterization of Hepatitis C Virus Subtype 3a Reveals Novel Hypervariable Regions under Positive Selection during Acute Infection

Genetic variations in IL28B and allergic disease in children

HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions

HLA-B*27 subtype specificity determines targeting and viral evolution of a hepatitis C virus-specific CD8+ T cell epitope

HLA-Bw4 homozygosity is associated with an impaired CD4 T cell recovery after initiation of antiretroviral therapy.

Helicobacter pylori adaptation in vivo in response to a high-salt diet

Hepatitis C virus drug resistance and immune-driven adaptations: relevance to new antiviral therapy

Host genetic determinants of spontaneous hepatitis C clearance

Host genetics and viral infections: immunology taught by viruses, virology taught by the immune system

IFN-λ and IgE-mediated Allergic Disease: A Potential Future Role? ⬇️

IL28B, HLA-C, and KIR variants additively predict response to therapy in chronic hepatitis C virus infection in a European Cohort: a cross-sectional study

Impact of host genetics on HIV disease progression and treatment: new conflicts on an ancient battleground

In polymorphic genomic regions indels cluster with nucleotide polymorphism: Quantum Genomics

Influence of HIV and HCV on T cell antigen presentation and challenges in the development of vaccines

Influence of Transmitted Virus on the Host's Immune Response: A Case Study.

Influence of host resistance on viral adaptation: hepatitis C virus as a case study

Influence of human leukocyte antigen (HLA) alleles and killer cell immunoglobulin-like receptors (KIR) types on heparin-induced thrombocytopenia (HIT).

Innate and adaptive immunity shape circulating HCV strains

Length variation of CAG/CAA triplet repeats in 50 genes among 16 inbred mouse strains

Longitudinal Trends in Western Australian HIV-1 Sequence Diversity and Viral Transmission Networks and Their Influence on Clinical Parameters: 2000-2014.

Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV cohort study.

Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

Mitochondrial DNA cytochrome oxidase I gene: potential for distinction between immature stages of some forensically important fly species (Diptera) in western Australia.

Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region

Molecular footprints reveal the impact of the protective HLA-A*03 allele in hepatitis C virus infection

Naturally occurring dominant drug resistance mutations occur infrequently in the setting of recently acquired hepatitis C.

New genetic predictors for abacavir tolerance in HLA-B*57:01 positive individuals

New hope for biomarkers in the practice of infectious diseases medicine

Pharmacogenetics of antiretroviral therapy: genetic variation of response and toxicity

Pharmacogenetics: a practical role in predicting antiretroviral drug toxicity?

Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants.

Population Level Analysis of Human Immunodeficiency Virus Type 1 Hypermutation and Its Relationship with APOBEC3G and Genetic Variation

Population level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation

Predisposition to abacavir hypersensitivity conferred by HLA-B*5701 and a haplotypic Hsp70-Hom variant

Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: relevance to treatment outcome and resistance screening.

Reconsideration of blood donation testing strategy for human T-cell lymphotropic virus in Australia.

Regulation of KIR3DL3 Expression via Mirna

Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection

Skewed association of polyfunctional antigen-specific CD8 T cell populations with HLA-B genotype

The Interferon Family as Biomarkers of Disease: Renaissance of the Innate Immune System ⬇️

The broad assessment of HCV genotypes 1 and 3 antigenic targets reveals limited cross-reactivity with implications for vaccine design

The impact of visa status and Medicare eligibility on people diagnosed with HIV in Western Australia: a qualitative report

The role of biomarkers in the prevention of globally important diseases

Three adjacent nucleotide changes spanning two residues in SARS-CoV-2 nucleoprotein: possible homologous recombination from the transcription-regulating sequence

Tracking Virus-Specific CD4+ T Cells during and after Acute Hepatitis C Virus Infection

Transmitted/Founder Viruses Rapidly Escape from CD8+ T Cell Responses in Acute Hepatitis C Virus Infection

Vertebrate species profiling in one step using a single primer.

Viral adaptation to host immune responses occurs in chronic hepatitis B virus (HBV) infection, and adaptation is greatest in HBV e antigen-negative disease.