List of works - Lionel Ranjard

A coordinated set of ecosystem research platforms open to international research in ecotoxicology, AnaEE-France

scientific article published on 29 August 2015

A meta-analysis of the ecotoxicological impact of viticultural practices on soil biodiversity

scientific article published in 2020

Assessing genetic structure and diversity of airborne bacterial communities by DNA fingerprinting and 16S rDNA clone library

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

scientific article published on 31 October 2020

Biodiversity of urban soils for sustainable cities

scientific article published in 2018

Biogeographical patterns of soil bacterial communities

scientific article

Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity

scholarly article by Battle Karimi et al published 7 March 2019 in Scientific Reports

Biogeography of Soil Microbial Communities: A Review and a Description of the Ongoing French National Initiative

article

Biogeography of soil bacteria and archaea across France.

scientific article

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

article

Characterization of a novel selenium methyltransferase from freshwater bacteria showing strong similarities with the calicheamicin methyltransferase.

scientific article

Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape

scientific article published on 28 April 2015

Copper dynamics and impact on microbial communities in soils of variable organic status

scientific article published on 01 April 2008

Correction: Mapping and predictive variations of soil bacterial richness across France

scientific article published on 18 December 2017

Dynamics and identification of soil microbial populations actively assimilating carbon from 13C-labelled wheat residue as estimated by DNA- and RNA-SIP techniques

scientific article published in March 2007

Ecotoxicity of copper input and accumulation for soil biodiversity in vineyards

scientific article published in 2021

Effect of natamycin on the enumeration, genetic structure and composition of bacterial community isolated from soils and soybean rhizosphere

scientific article

Effect of primary mild stresses on resilience and resistance of the nitrate reducer community to a subsequent severe stress.

scientific article

Estimation of atrazine-degrading genetic potential and activity in three French agricultural soils.

scientific article published in June 2004

Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure

scientific article

Field and microcosm experiments to evaluate the effects of agricultural Cu treatment on the density and genetic structure of microbial communities in two different soils

scientific article published in November 2006

Fingerprinting and diversity of bacterial copA genes in response to soil types, soil organic status and copper contamination.

scientific article published in September 2007

Freshwater bacteria can methylate selenium through the thiopurine methyltransferase pathway

scientific article

GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity

scientific article published in January 2016

High microbial diversity promotes soil ecosystem functioning.

scientific article published on 16 February 2018

High‑throughput sequencing of amplicons for monitoring yeast biodiversity in must and during alcoholic fermentation.

scientific article

Identification of cellulolytic bacteria in soil by stable isotope probing

scientific article published in March 2007

Impact of farming systems on soil ecological quality: a meta-analysis

scientific article published in 2021

Impact of inoculation with the phytostimulatory PGPR Azospirillum lipoferum CRT1 on the genetic structure of the rhizobacterial community of field-grown maize

Impacts of national scale digital soil mapping programs in France

scientific article published in 2020

In situ dynamics and spatial heterogeneity of soil bacterial communities under different crop residue management.

scientific article

In situ dynamics of microbial communities during decomposition of wheat, rape, and alfalfa residues

scientific article

Inferring microbiota functions from taxonomic genes: a review

scientific article published on 13 January 2022

Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil

scientific article published on 23 June 2015

Landscape-scale analysis of cropping system effects on soil quality in a context of crop-livestock farming

scientific article published in 2018

Legacy of land-cover changes on soil microbiology in Burgundy vineyards (Pernand-Vergelesses, France)

scientific article published in 2022

Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment ⬇️

scientific article

Mapping and determinism of soil microbial community distribution across an agricultural landscape

scientific article published on April 2015

Mapping and predictive variations of soil bacterial richness across France

scientific article published on 23 October 2017

Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition.

scientific article

Metaproteomics: a new approach for studying functional microbial ecology

scientific article

Methylation of inorganic and organic selenium by the bacterial thiopurine methyltransferase.

scientific article

Microbial community structure and density under different tree species in an acid forest soil (Morvan, France).

scientific article published in November 2005

Microbial diversity and ecological networks as indicators of environmental quality

scientific article published in 2017

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure

scientific article

Platform GenoSol: a new tool for conserving and exploring soil microbial diversity

scientific article published on 03 March 2009

Protein and DNA fingerprinting of a soil bacterial community inoculated into three different sterile soils

scientific article published on 8 April 2008

Radioecological risk assessment of low selenium concentrations through genetic fingerprints and metabolic profiling of soil bacterial communities

scientific article published on 16 March 2011

ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition ⬇️

scholarly article

Relationships between soil organic status and microbial community density and genetic structure in two agricultural soils submitted to various types of organic management.

scientific article

Reply to the comment by Imfeld et al. on ‘Ecotoxicity of copper input and accumulation for soil biodiversity in vineyards’ by Karimi et al. (2021)

scientific article published in 2021

Response of soil bacterial community structure to successive perturbations of different types and intensities

article

Sampling strategy in molecular microbial ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities

scientific article

Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil

scholarly article by Vincent Tardy et al published November 2015 in Soil Biology and Biochemistry

Similar processes but different environmental filters for soil bacterial and fungal community composition turnover on a broad spatial scale.

scientific article

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

scholarly article by Bruce C. Thomson et al published September 2015 in Soil Biology and Biochemistry

Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar.

scientific article published on 17 October 2017

Soil microbial diversity: Methodological strategy, spatial overview and functional interest ⬇️

scientific article published on February 15, 2011

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

scientific article published in Scientific Reports

Sols, sciences et recherches participatives : comment consolider et fédérer le foisonnement d’initiatives en France ?

scientific article published in 2023

Stability of soil microbial structure and activity depends on microbial diversity

scientific article

Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect

article

Temporal variability of airborne bacterial community structure in an urban area

The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments

scientific article published on 13 March 2008

Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale

scientific article published on 13 June 2018

Ultrahigh-resolution FT-ICR mass spectrometry for molecular characterisation of pressurised hot water-extractable organic matter in soils

scientific article published in 2016

Understanding and managing soil biodiversity: a major challenge in agroecology

Urban land uses shape soil microbial abundance and diversity

scientific article published in 2023

Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.

scientific article

List of works by Lionel Ranjard

A coordinated set of ecosystem research platforms open to international research in ecotoxicology, AnaEE-France

A meta-analysis of the ecotoxicological impact of viticultural practices on soil biodiversity

Assessing genetic structure and diversity of airborne bacterial communities by DNA fingerprinting and 16S rDNA clone library

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

Biodiversity of urban soils for sustainable cities

Biogeographical patterns of soil bacterial communities

Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity

Biogeography of Soil Microbial Communities: A Review and a Description of the Ongoing French National Initiative

Biogeography of soil bacteria and archaea across France.

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

Characterization of a novel selenium methyltransferase from freshwater bacteria showing strong similarities with the calicheamicin methyltransferase.

Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape

Copper dynamics and impact on microbial communities in soils of variable organic status

Correction: Mapping and predictive variations of soil bacterial richness across France

Dynamics and identification of soil microbial populations actively assimilating carbon from 13C-labelled wheat residue as estimated by DNA- and RNA-SIP techniques

Ecotoxicity of copper input and accumulation for soil biodiversity in vineyards

Effect of natamycin on the enumeration, genetic structure and composition of bacterial community isolated from soils and soybean rhizosphere

Effect of primary mild stresses on resilience and resistance of the nitrate reducer community to a subsequent severe stress.

Estimation of atrazine-degrading genetic potential and activity in three French agricultural soils.

Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure

Field and microcosm experiments to evaluate the effects of agricultural Cu treatment on the density and genetic structure of microbial communities in two different soils

Fingerprinting and diversity of bacterial copA genes in response to soil types, soil organic status and copper contamination.

Freshwater bacteria can methylate selenium through the thiopurine methyltransferase pathway

GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity

High microbial diversity promotes soil ecosystem functioning.

High‑throughput sequencing of amplicons for monitoring yeast biodiversity in must and during alcoholic fermentation.

Identification of cellulolytic bacteria in soil by stable isotope probing

Impact of farming systems on soil ecological quality: a meta-analysis

Impact of inoculation with the phytostimulatory PGPR Azospirillum lipoferum CRT1 on the genetic structure of the rhizobacterial community of field-grown maize

Impacts of national scale digital soil mapping programs in France

In situ dynamics and spatial heterogeneity of soil bacterial communities under different crop residue management.

In situ dynamics of microbial communities during decomposition of wheat, rape, and alfalfa residues

Inferring microbiota functions from taxonomic genes: a review

Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil

Landscape-scale analysis of cropping system effects on soil quality in a context of crop-livestock farming

Legacy of land-cover changes on soil microbiology in Burgundy vineyards (Pernand-Vergelesses, France)

Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment ⬇️

Mapping and determinism of soil microbial community distribution across an agricultural landscape

Mapping and predictive variations of soil bacterial richness across France

Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition.

Metaproteomics: a new approach for studying functional microbial ecology

Methylation of inorganic and organic selenium by the bacterial thiopurine methyltransferase.

Microbial community structure and density under different tree species in an acid forest soil (Morvan, France).

Microbial diversity and ecological networks as indicators of environmental quality

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure

Platform GenoSol: a new tool for conserving and exploring soil microbial diversity

Protein and DNA fingerprinting of a soil bacterial community inoculated into three different sterile soils

Radioecological risk assessment of low selenium concentrations through genetic fingerprints and metabolic profiling of soil bacterial communities

ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition ⬇️

Relationships between soil organic status and microbial community density and genetic structure in two agricultural soils submitted to various types of organic management.

Reply to the comment by Imfeld et al. on ‘Ecotoxicity of copper input and accumulation for soil biodiversity in vineyards’ by Karimi et al. (2021)

Response of soil bacterial community structure to successive perturbations of different types and intensities

Sampling strategy in molecular microbial ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities

Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil

Similar processes but different environmental filters for soil bacterial and fungal community composition turnover on a broad spatial scale.

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar.

Soil microbial diversity: Methodological strategy, spatial overview and functional interest ⬇️

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

Sols, sciences et recherches participatives : comment consolider et fédérer le foisonnement d’initiatives en France ?

Stability of soil microbial structure and activity depends on microbial diversity

Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect

Temporal variability of airborne bacterial community structure in an urban area

The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments

Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale

Ultrahigh-resolution FT-ICR mass spectrometry for molecular characterisation of pressurised hot water-extractable organic matter in soils

Understanding and managing soil biodiversity: a major challenge in agroecology

Urban land uses shape soil microbial abundance and diversity

Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.