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List of works by Wesley C Warren

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

scientific article published on 30 October 2017

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination

scientific article published on 30 March 2016

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

scientific article

A RAD-tag genetic map for the platyfish (Xiphophorus maculatus) reveals mechanisms of karyotype evolution among teleost fish

scientific article

A catalog of reference genomes from the human microbiome

scientific article

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

scientific article

A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes

scientific article published on 05 May 2019

A high-resolution map of human evolutionary constraint using 29 mammals

scientific article

A limited role for gene duplications in the evolution of platypus venom

scientific article published on 3 August 2011

A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism

scientific article published on 22 October 2020

A non-human primate system for large-scale genetic studies of complex traits

scientific article

A physical map of the chicken genome

scientific article

A proposal to sequence the genome of a garter snake (Thamnophis sirtalis) ⬇️

scientific article

A vertebrate case study of the quality of assemblies derived from next-generation sequences

scientific article

Ancient hybridization and strong adaptation to viruses across African vervet monkey populations

scientific article published on 22 November 2016

Ancient hybridization and strong adaptation to viruses across African vervet monkey populations.

scientific article

Antarctic blackfin icefish genome reveals adaptations to extreme environments

scientific article published on 25 February 2019

Application of the Transcriptional Disease Signature (TDSs) to Screen Melanoma-Effective Compounds in a Small Fish Model

scientific article published in Scientific Reports

Applications and efficiencies of the first cat 63K DNA array.

scientific article published on 4 May 2018

Author Correction: Applications and efficiencies of the first cat 63K DNA array.

scientific article published on 4 June 2018

Author Correction: Applications and efficiencies of the first cat 63 K DNA array

scientific article published on 12 March 2019

Author Correction: Comparative and demographic analysis of orang-utan genomes

correction of a scholarly article

Author Correction: Elephant shark genome provides unique insights into gnathostome evolution

scientific article published on 19 November 2020

Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators

scientific article published on 30 January 2017

Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216

scientific article

Building and Improving Reference Genome Assemblies

Characterizing the Major Structural Variant Alleles of the Human Genome

scientific article published on 17 January 2019

Characterizing the chromosomes of the platypus (Ornithorhynchus anatinus).

scientific article published on January 2007

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

scientific article published on 13 January 2010

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

scientific article published on 12 February 2018

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

scientific article

Comparative and demographic analysis of orang-utan genomes

scientific article

Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes

scientific article published on 02 September 2019

Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals

scientific article (publication date: April 2010)

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

scientific article

Comparative genomics reveals insights into avian genome evolution and adaptation

scientific article

Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions

scientific article published on 8 January 2018

Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid

scientific article

Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae).

scientific article published on 09 June 2017

Conserved syntenic clusters of protein coding genes are missing in birds

scientific article

Convergence in feeding posture occurs through different genetic loci in independently evolved cave populations of Astyanax mexicanus

scientific article published on October 2013

Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

scientific article

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail

scientific article published on 23 August 2017

De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin

scientific article

Defensins and the convergent evolution of platypus and reptile venom genes

scientific article published in June 2008

Digital gene expression for non-model organisms

scientific article

Divergence and Functional Degradation of a Sex Chromosome-like Supergene

scientific article published on 20 January 2016

Diversity of Immunoglobulin Light Chain Genes in Non-Teleost Ray-Finned Fish Uncovers IgL Subdivision into Five Ancient Isotypes.

scientific article

Echidna venom gland transcriptome provides insights into the evolution of monotreme venom

scientific article (publication date: 2013)

Elephant shark genome provides unique insights into gnathostome evolution

scientific article (publication date: 9 January 2014)

Erratum: Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution

scientific article published in Nature

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

scientific article published on 13 February 2019

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article

Evolutionary signals of selection on cognition from the great tit genome and methylome.

scientific article published on 25 January 2016

Evolutionary toggling of the MAPT 17q21.31 inversion region

scientific article

Expression Signatures of Cisplatin- and Trametinib-Treated Early-Stage Medaka Melanomas

scientific article published on 09 July 2019

Expression signatures of early-stage and advanced medaka melanomas

scientific article published on 18 November 2017

Extensive error in the number of genes inferred from draft genome assemblies

scientific article

Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly

article by Yuan Lu et al published 5 February 2021 in Genome Research

Fosmid-based physical mapping of the Histoplasma capsulatum genome

scientific article published in August 2004

Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome

scientific article

Gene duplication and fragmentation in the zebra finch major histocompatibility complex.

scientific article

Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model

article

Generation and annotation of the DNA sequences of human chromosomes 2 and 4

scientific article

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

article

Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate

scientific article

Genome analysis of the platypus reveals unique signatures of evolution

scientific article

Genome analysis of the platypus reveals unique signatures of evolution

scientific article published in Nature

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

scientific article

Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment

scientific article

Genome of the human hookworm Necator americanus

scientific article

Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species

scientific article

Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions

scientific article

Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates

scientific article

Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

scientific article

Gibbon genome and the fast karyotype evolution of small apes

scientific article

Global assessment of organ specific basal gene expression over a diurnal cycle with analyses of gene copies exhibiting cyclic expression patterns

scientific article published on 11 November 2020

Graph accordance of next-generation sequence assemblies

scientific article

High-coverage sequencing and annotated assemblies of the budgerigar genome

scientific article

High-resolution comparative analysis of great ape genomes

scientific article published in Science

Higher-order genome organization in platypus and chicken sperm and repositioning of sex chromosomes during mammalian evolution

scientific article published on 26 August 2008

Human-specific tandem repeat expansion and differential gene expression during primate evolution

scientific article published on 28 October 2019

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

scientific article

Identification and analysis of divergent immune gene families within the Tasmanian devil genome

scientific article published on 26 November 2015

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).

scientific article published on 8 March 2018

Independent specialization of the human and mouse X chromosomes for the male germ line

scientific article

Insights into hominid evolution from the gorilla genome sequence

scientific article

Joint MiRNA/mRNA expression profiling reveals changes consistent with development of dysfunctional corpus luteum after weight gain.

scientific article published on 10 August 2015

Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish

scientific article published in Nature Communications

Loss of genes implicated in gastric function during platypus evolution

scientific article published on 15 May 2008

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

scientific article

Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.

scientific article

Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome

scientific article published on 01 August 2018

Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.

scientific article published on 27 March 2017

Neuronal Ceroid Lipofuscinosis in a Domestic Cat Associated with a DNA Sequence Variant That Creates a Premature Stop Codon in CLN6

scientific article published on 09 June 2020

No bull: upholding community standards in public sharing of biological datasets.

scientific article published on 30 October 2013

Novel venom gene discovery in the platypus.

scientific article published on 29 September 2010

On the origin of SCPP genes

article

Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).

scientific article published on 29 April 2016

PGD: a pangolin genome hub for the research community

scientific article published on 11 September 2016

Pangolin genomes and the evolution of mammalian scales and immunity

scientific article published on 10 August 2016

Patterns of Genome-Wide Variation in Glossina fuscipes fuscipes Tsetse Flies from Uganda

scientific article published on 13 April 2016

Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation

scientific article published on 24 June 2015

Physical map-assisted whole-genome shotgun sequence assemblies

scientific article

Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals

scientific article (publication date: 25 July 2008)

Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis

article

Proteomics and deep sequencing comparison of seasonally active venom glands in the platypus reveals novel venom peptides and distinct expression profiles.

scientific article

Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations

scientific article published on 01 November 2018

Reconstructing sex chromosome evolution.

scientific article published on 11 October 2010

Resources for genetic and genomic studies of Xenopus

scientific article published in January 2006

Response to Hron et al.

scientific article

Sequence analysis in Bos taurus reveals pervasiveness of X-Y arms races in mammalian lineages

scientific article published on 18 November 2020

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

scientific article

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

scientific article

Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits

scientific article published on 20 June 2015

Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes

scientific article published on 28 July 2011

Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes

scientific article

Single haplotype assembly of the human genome from a hydatidiform mole

scientific article

Specifying and sustaining pigmentation patterns in domestic and wild cats

scientific article

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

scientific article

Systems biology of the vervet monkey

scientific article

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

scientific article

The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails

scientific article published on 02 December 2020

The Genome and Adult Somatic Transcriptome of the Mormyrid Electric Fish Paramormyrops kingsleyae

scientific article published on 12 December 2017

The Glossina Genome Cluster: Comparative Genomic Analysis of the Vectors of African Trypanosomes

The Novel Evolution of the Sperm Whale Genome

scientific article

The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling

scientific article published on 27 November 2015

The Piranha Genome Provides Molecular Insight Associated to Its Unique Feeding Behavior

scientific article published on 01 August 2019

The cavefish genome reveals candidate genes for eye loss

scientific article

The development and characterization of a 60K SNP chip for chicken.

scientific article

The draft genome of the parasitic nematode Trichinella spiralis

scientific article

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

scientific article

The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development

scientific article published on 20 February 2018

The genome of a songbird

scientific article

The genome of the Western clawed frog Xenopus tropicalis

scientific article

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

scientific article

The genome of the vervet (Chlorocebus aethiops sabaeus)

scientific article published on 16 September 2015

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

scientific article

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish ⬇️

scientific article

The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS

scientific article published in 2021

The landscape of extreme genomic variation in the highly adaptable Atlantic killifish

scientific article published on 13 February 2017

The practical use of genome sequencing data in the management of a feline colony pedigree

scientific article published on 27 July 2017

The quail genome: insights into social behaviour, seasonal biology and infectious disease response

scientific article published on 12 February 2020

The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus

article

The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish

scientific article published on 19 September 2017

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

scientific article published on 30 March 2020

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

scientific article

Third Report on Chicken Genes and Chromosomes 2015.

scientific article published on 14 July 2015

To the Root of the Curl: A Signature of a Recent Selective Sweep Identifies a Mutation That Defines the Cornish Rex Cat Breed

scientific article

Towards complete and error-free genome assemblies of all vertebrate species

scientific article

Transcriptome Analysis of Female and Male Xiphophorus maculatus Jp 163 A ⬇️

scientific article published on April 5, 2011

Transcriptomic analysis of cultured whale skin cells exposed to hexavalent chromium [Cr(VI)]

scientific article (publication date: 15 June 2013)

Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

scientific article published on 19 December 2017

Ultracontinuous single haplotype genome assemblies for the domestic cat (Felis catus) and Asian leopard cat (Prionailurus bengalensis)

scientific article published on 11 December 2020

Understanding and utilising mammalian venom via a platypus venom transcriptome

scientific article published on 25 December 2008

Venkatesh et al. reply

scientific article published in July 2014

Whole Body Melanoma Transcriptome Response in Medaka

scientific article

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

scientific article published on 16 May 2017

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

scientific article published on 7 January 2016

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