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List of works by Kenta Nakai

A hypothetical trivalent epigenetic code that affects the nature of human ESCs

scientific article published on 10 September 2020

Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma

scientific article published on 20 March 2019

Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses.

scientific article published on 27 June 2018

Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer

scientific article published on 17 April 2010

Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics

scientific article published on 14 May 2008

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data

scientific article

DBTSS provides a tissue specific dynamic view of Transcription Start Sites

scientific article

DBTSS, DataBase of Transcriptional Start Sites: progress report 2004.

scientific article published on January 2004

DBTSS/DBKERO for integrated analysis of transcriptional regulation

scientific article published on 8 November 2017

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

scientific article

DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs ⬇️

scientific article published on January 1, 2002

DBTSS: database of transcription start sites, progress report 2008.

scientific article published on 16 October 2007

Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites

scientific article published on 27 June 2014

Differential landscape of non-CpG methylation in embryonic stem cells and neurons caused by DNMT3s.

scientific article published on 12 September 2017

Diverse DNA methylation statuses at alternative promoters of human genes in various tissues

scientific article published in August 2006

Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity

scientific article published on 19 March 2005

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

scientific article published on 3 March 2011

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Intrinsic promoter activities of primary DNA sequences in the human genome

scientific article published on April 2007

Large-scale collection and characterization of promoters of human and mouse genes.

scientific article

Massive transcriptional start site analysis of human genes in hypoxia cells

scientific article

Predicting promoter activities of primary human DNA sequences ⬇️

scientific article published on April 12, 2011

Protein design via deep learning

publication published on 01 May 2022

Small open reading frames in 5' untranslated regions of mRnas

scientific article published on October 2003

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

scientific article

Transcriptome analyses and transcriptome databases

scientific article published in August 2004

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