List of works - Nicholas M Fountain-Jones

Chronic infections can shape epidemic exposure: Pathogen co-occurrence networks in the Serengeti lions

scientific article published on 17 July 2018

Cross-species transmission and evolutionary dynamics of canine distemper virus during a spillover in African lions of Serengeti National Park

scientific article published on 18 April 2020

Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development

scientific article published on 20 February 2020

Emerging phylogenetic structure of the SARS-CoV-2 pandemic

scientific article published on 20 May 2020

Emerging phylogenetic structure of the SARS-CoV-2 pandemic

scientific article published on 01 July 2020

Endemic infection can shape exposure to novel pathogens: Pathogen co-occurrence networks in the Serengeti lions

scientific article published on 12 March 2019

Group density, disease, and season shape territory size and overlap of social carnivores

scientific article published on 12 July 2020

Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal

scientific article published on 29 August 2019

Host relatedness and landscape connectivity shape pathogen spread in the puma, a large secretive carnivore

scientific article published on 04 January 2021

How to make more from exposure data? An integrated machine learning pipeline to predict pathogen exposure

scientific article published on 19 August 2019

Hunting alters viral transmission and evolution in a large carnivore

scientific article published on 27 January 2022

Incorporating genomic methods into contact networks to reveal new insights into animal behavior and infectious disease dynamics

scientific article published on 01 January 2018

Linking social and spatial networks to viral community phylogenetics reveal subtype specific transmission dynamics in African lions.

scientific article published on 8 September 2017

Machine learning in molecular ecology

scientific article published on 05 November 2021

Machine-learning model led design to experimentally test species thermal limits: The case of kissing bugs (Triatominae)

scientific article published in 2021

Mainstreaming Microbes across Biomes

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition

scientific article published on 26 January 2020

Mitochondrial genome sequencing reveals potential origins of the scabies mite Sarcoptes scabiei infesting two iconic Australian marsupials

scientific article

MrIML: Multi‐response interpretable machine learning to model genomic landscapes

scientific article published on 27 August 2021

Novel smacoviruses identified in the faeces of two wild felids: North American bobcat and African lion

scientific article published on 22 June 2019

Pathogens in space: Advancing understanding of pathogen dynamics and disease ecology through landscape genetics

scientific article published on 28 July 2018

Sharing and reporting benefits from biodiversity research

scientific article published on 06 November 2020

Spatiotemporal evolutionary epidemiology of H5N1 highly pathogenic avian influenza in West Africa and Nigeria, 2006-2015.

scientific article published on 14 July 2017

Species‐specific spatiotemporal patterns of leopard, lion and tiger attacks on humans

scientific article published in 2019

Strong trait correlation and phylogenetic signal in North American ground beetle (Carabidae) morphology

scientific article published on 24 November 2021

The Expectations and Challenges of Wildlife Disease Research in the Era of Genomics: Forecasting with a Horizon Scan-like Exercise

article

Towards an eco-phylogenetic framework for infectious disease ecology.

scientific article published on 8 November 2017

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore.

scientific article published on 7 October 2017

Urbanization impacts apex predator gene flow but not genetic diversity across an urban-rural divide

scientific article published on 01 November 2019

Using host traits to predict reservoir host species of rabies virus

scientific article published on 08 December 2020

List of works by Nicholas M Fountain-Jones

Chronic infections can shape epidemic exposure: Pathogen co-occurrence networks in the Serengeti lions

Cross-species transmission and evolutionary dynamics of canine distemper virus during a spillover in African lions of Serengeti National Park

Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development

Emerging phylogenetic structure of the SARS-CoV-2 pandemic

Emerging phylogenetic structure of the SARS-CoV-2 pandemic

Endemic infection can shape exposure to novel pathogens: Pathogen co-occurrence networks in the Serengeti lions

Group density, disease, and season shape territory size and overlap of social carnivores

Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal

Host relatedness and landscape connectivity shape pathogen spread in the puma, a large secretive carnivore

How to make more from exposure data? An integrated machine learning pipeline to predict pathogen exposure

Hunting alters viral transmission and evolution in a large carnivore

Incorporating genomic methods into contact networks to reveal new insights into animal behavior and infectious disease dynamics

Linking social and spatial networks to viral community phylogenetics reveal subtype specific transmission dynamics in African lions.

Machine learning in molecular ecology

Machine-learning model led design to experimentally test species thermal limits: The case of kissing bugs (Triatominae)

Mainstreaming Microbes across Biomes

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition

Mitochondrial genome sequencing reveals potential origins of the scabies mite Sarcoptes scabiei infesting two iconic Australian marsupials

MrIML: Multi‐response interpretable machine learning to model genomic landscapes

Novel smacoviruses identified in the faeces of two wild felids: North American bobcat and African lion

Pathogens in space: Advancing understanding of pathogen dynamics and disease ecology through landscape genetics

Sharing and reporting benefits from biodiversity research

Spatiotemporal evolutionary epidemiology of H5N1 highly pathogenic avian influenza in West Africa and Nigeria, 2006-2015.

Species‐specific spatiotemporal patterns of leopard, lion and tiger attacks on humans

Strong trait correlation and phylogenetic signal in North American ground beetle (Carabidae) morphology

The Expectations and Challenges of Wildlife Disease Research in the Era of Genomics: Forecasting with a Horizon Scan-like Exercise

Towards an eco-phylogenetic framework for infectious disease ecology.

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore.

Urbanization impacts apex predator gene flow but not genetic diversity across an urban-rural divide

Using host traits to predict reservoir host species of rabies virus