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List of works by Ite Laird-Offringa

A comparison of cluster analysis methods using DNA methylation data

scientific article

A global benchmark study using affinity-based biosensors.

scientific article

An Evolved RNA Recognition Motif That Suppresses HIV-1 Tat/TAR-Dependent Transcription

scientific article published on 02 June 2016

Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations

scientific article published on 26 December 2016

CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer.

scientific article

Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA.

scientific article

Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue

scientific article published on 27 February 2014

Classification of individual lung cancer cell lines based on DNA methylation markers: use of linear discriminant analysis and artificial neural networks

scientific article published on February 2004

Combinations of differentiation markers distinguish subpopulations of alveolar epithelial cells in adult lung

scientific article

Complex role of the beta 2-beta 3 loop in the interaction of U1A with U1 hairpin II RNA.

scientific article published on 24 June 2002

Conformationally restricted nucleotides as a probe of structure-function relationships in RNA.

scientific article published on 2 July 2008

Cross-Species Transcriptome Profiling Identifies New Alveolar Epithelial Type I Cell-Specific Genes

scientific article published on 17 October 2016

DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation ⬇️

scientific article published on November 8, 2012

DNA methylation analysis: a powerful new tool for lung cancer diagnosis

scientific article

DNA methylation changes in atypical adenomatous hyperplasia, adenocarcinoma in situ, and lung adenocarcinoma.

scientific article

DNA methylation profile of 28 potential marker loci in malignant mesothelioma

scientific article

DNA methylation-based biomarkers for early detection of non-small cell lung cancer: an update

scientific article

Data on isoaspartylation of neuronal ELAVL proteins

scientific article

Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung.

scientific article published in February 2005

Epigenetic Therapy in Lung Cancer ⬇️

scientific article published on May 30, 2013

Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers

scientific article published on August 2017

Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression.

scientific article

Genome-scale screen for DNA methylation-based detection markers for ovarian cancer

scientific article (publication date: 2011)

HuD RNA Recognition Motifs Play Distinct Roles in the Formation of a Stable Complex with AU-Rich RNA.

scientific article published in August 2004

HuR/methyl-HuR and AUF1 regulate the MAT expressed during liver proliferation, differentiation, and carcinogenesis

scientific journal article

Identification of a panel of sensitive and specific DNA methylation markers for lung adenocarcinoma

scientific article

Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer

scientific article published on 10 July 2008

Immune response in lung cancer mouse model mimics human anti-Hu reactivity.

scientific article published on 17 September 2009

Integrated Single-Cell RNA-Sequencing Analysis of Aquaporin 5-Expressing Mouse Lung Epithelial Cells Identifies GPRC5A as a Novel Validated Type I Cell Surface Marker

scientific article published on 11 November 2020

Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation.

scientific article

Isoaspartylation appears to trigger small cell lung cancer-associated autoimmunity against neuronal protein ELAVL4.

scientific article

Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction

scientific article

Kinetic studies of RNA-protein interactions using surface plasmon resonance.

scientific article

Knockout mice reveal key roles for claudin 18 in alveolar barrier properties and fluid homeostasis

scientific article

Lipopolysaccharide-induced methylation of HuR, an mRNA-stabilizing protein, by CARM1. Coactivator-associated arginine methyltransferase

scientific article

Molecular portraits of epithelial, mesenchymal, and hybrid States in lung adenocarcinoma and their relevance to survival.

scientific article published on 5 March 2015

Pleiotropic Analysis of Lung Cancer and Blood Triglycerides

scientific article

Publisher Correction: Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs

scientific article published on 8 January 2018

Small-cell lung cancer-associated autoantibodies: potential applications to cancer diagnosis, early detection, and therapy ⬇️

scientific article published on March 30, 2011

Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target.

scientific article

Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study.

scientific article

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma

scientific article published on 14 September 2020

The 78-kD Glucose-Regulated Protein Regulates Endoplasmic Reticulum Homeostasis and Distal Epithelial Cell Survival during Lung Development

scientific article published on 27 January 2016

The Sulfotransferase <i>SULT1C2</i> Is Epigenetically Activated and Transcriptionally Induced by Tobacco Exposure and Is Associated with Patient Outcome in Lung Adenocarcinoma

scientific article published on 31 December 2021

The importance of detailed epigenomic profiling of different cell types within organs

scientific article published on 15 June 2016

The role of DNA methylation in the development and progression of lung adenocarcinoma

scientific article published on January 2007

The role of RNA structure in the interaction of U1A protein with U1 hairpin II RNA

scientific article published on 31 May 2006

The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA

scientific article

The role of the C-terminal helix of U1A protein in the interaction with U1hpII RNA ⬇️

scientific article published on May 22, 2013

Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs.

scientific article published on 27 November 2017

Transcriptomic Profiling of Primary Alveolar Epithelial Cell Differentiation in Human and Rat.

scientific article published on December 2014

Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women

scientific article published on 12 July 2019

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