List of works - Daniel J Weisenberger

3-D DNA methylation phenotypes correlate with cytotoxicity levels in prostate and liver cancer cell models

scientific article

A pilot genome-scale profiling of DNA methylation in sporadic pituitary macroadenomas: association with tumor invasion and histopathological subtype

scientific article

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

scientific article

Alcohol intake and colorectal cancer risk by molecularly defined subtypes in a prospective study of older women

scientific article published on 7 September 2011

Analysis of repetitive element DNA methylation by MethyLight

scientific article

Analysis of the association between CIMP and BRAF in colorectal cancer by DNA methylation profiling

scientific article

Association between molecular subtypes of colorectal cancer and patient survival ⬇️

scientific article

Association of the colorectal CpG island methylator phenotype with molecular features, risk factors, and family history

scientific article

Associations between colorectal cancer molecular markers and pathways with clinicopathologic features in older women

scientific article published on 07 May 2013

Associations between intake of folate and related micronutrients with molecularly defined colorectal cancer risks in the Iowa Women's Health Study

scientific article published on January 2012

Cancer risks for the relatives of colorectal cancer cases with a methylated MLH1 promoter region: data from the Colorectal Cancer Family Registry

scientific article

Cigarette smoking and colorectal cancer risk by molecularly defined subtypes

scientific article

Clinicopathologic Risk Factor Distributions for MLH1 Promoter Region Methylation in CIMP-Positive Tumors.

scientific article

Combination Epigenetic Therapy in Advanced Breast Cancer with 5-Azacitidine and Entinostat: A Phase II National Cancer Institute/Stand Up to Cancer Study

scientific article

Combination epigenetic therapy in metastatic colorectal cancer (mCRC) with subcutaneous 5-azacitidine and entinostat: a phase 2 consortium/stand up 2 cancer study

scientific article

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

article

Comprehensive Characterization of Cancer Driver Genes and Mutations

article

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

scientific article published on 4 November 2015

Continuous zebularine treatment effectively sustains demethylation in human bladder cancer cells

scientific article published on February 2004

DNA Methylation in the Malignant Transformation of Meningiomas ⬇️

scientific article published on January 22, 2013

DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons

scientific article

Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome.

scientific article

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns

scientific article published on 23 September 2009

Epigenetic subgroups of esophageal and gastric adenocarcinoma with differential GATA5 DNA methylation associated with clinical and lifestyle factors

scientific article (publication date: 2011)

Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level

scientific article

Frequency of deletions of EPCAM (TACSTD1) in MSH2-associated Lynch syndrome cases

scientific article

Genetic and Epigenetic Alterations in Bladder Cancer

scientific article

Genome-Scale Discovery of DNA-Methylation Biomarkers for Blood-Based Detection of Colorectal Cancer ⬇️

scientific article published on November 28, 2012

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

scientific article published on 9 June 2011

Identification and characterization of alternatively spliced variants of DNA methyltransferase 3a in mammalian cells.

scientific article

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

scientific article

Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer

scientific article published on 10 July 2008

Integrated analysis of genome-wide copy number alterations and gene expression in microsatellite stable, CpG island methylator phenotype-negative colon cancer

scientific article

LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors

scientific article

Low-level processing of Illumina Infinium DNA Methylation BeadArrays ⬇️

scientific article published on March 9, 2013

Modeling measurement error in tumor characterization studies ⬇️

scientific article published on July 13, 2011

Molecular characterization of MSI-H colorectal cancer by MLHI promoter methylation, immunohistochemistry, and mismatch repair germline mutation screening

scientific article

Postmenopausal hormone therapy and colorectal cancer risk by molecularly defined subtypes among older women

scientific article published on 24 October 2011

Precision and performance characteristics of bisulfite conversion and real-time PCR (MethyLight) for quantitative DNA methylation analysis

scientific article published on May 2006

Promoter methylation of ITF2, but not APC, is associated with microsatellite instability in two populations of colorectal cancer patients.

scientific article published on 17 February 2016

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

scientific article

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

article

The genomic landscape of tuberous sclerosis complex

scientific article

The relationship of DNA methylation with age, gender and genotype in twins and healthy controls

scientific article

The somatic genomic landscape of glioblastoma

scientific article

Tumor Budding in Colorectal Carcinoma: Confirmation of Prognostic Significance and Histologic Cutoff in a Population-based Cohort

scientific article

Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue

scientific article

cis-Expression QTL analysis of established colorectal cancer risk variants in colon tumors and adjacent normal tissue

scientific article published on 17 February 2012

List of works by Daniel J Weisenberger

3-D DNA methylation phenotypes correlate with cytotoxicity levels in prostate and liver cancer cell models

A pilot genome-scale profiling of DNA methylation in sporadic pituitary macroadenomas: association with tumor invasion and histopathological subtype

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

Alcohol intake and colorectal cancer risk by molecularly defined subtypes in a prospective study of older women

Analysis of repetitive element DNA methylation by MethyLight

Analysis of the association between CIMP and BRAF in colorectal cancer by DNA methylation profiling

Association between molecular subtypes of colorectal cancer and patient survival ⬇️

Association of the colorectal CpG island methylator phenotype with molecular features, risk factors, and family history

Associations between colorectal cancer molecular markers and pathways with clinicopathologic features in older women

Associations between intake of folate and related micronutrients with molecularly defined colorectal cancer risks in the Iowa Women's Health Study

Cancer risks for the relatives of colorectal cancer cases with a methylated MLH1 promoter region: data from the Colorectal Cancer Family Registry

Cigarette smoking and colorectal cancer risk by molecularly defined subtypes

Clinicopathologic Risk Factor Distributions for MLH1 Promoter Region Methylation in CIMP-Positive Tumors.

Combination Epigenetic Therapy in Advanced Breast Cancer with 5-Azacitidine and Entinostat: A Phase II National Cancer Institute/Stand Up to Cancer Study

Combination epigenetic therapy in metastatic colorectal cancer (mCRC) with subcutaneous 5-azacitidine and entinostat: a phase 2 consortium/stand up 2 cancer study

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

Comprehensive Characterization of Cancer Driver Genes and Mutations

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

Continuous zebularine treatment effectively sustains demethylation in human bladder cancer cells

DNA Methylation in the Malignant Transformation of Meningiomas ⬇️

DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons

Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome.

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns

Epigenetic subgroups of esophageal and gastric adenocarcinoma with differential GATA5 DNA methylation associated with clinical and lifestyle factors

Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level

Frequency of deletions of EPCAM (TACSTD1) in MSH2-associated Lynch syndrome cases

Genetic and Epigenetic Alterations in Bladder Cancer

Genome-Scale Discovery of DNA-Methylation Biomarkers for Blood-Based Detection of Colorectal Cancer ⬇️

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

Identification and characterization of alternatively spliced variants of DNA methyltransferase 3a in mammalian cells.

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer

Integrated analysis of genome-wide copy number alterations and gene expression in microsatellite stable, CpG island methylator phenotype-negative colon cancer

LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors

Low-level processing of Illumina Infinium DNA Methylation BeadArrays ⬇️

Modeling measurement error in tumor characterization studies ⬇️

Molecular characterization of MSI-H colorectal cancer by MLHI promoter methylation, immunohistochemistry, and mismatch repair germline mutation screening

Postmenopausal hormone therapy and colorectal cancer risk by molecularly defined subtypes among older women

Precision and performance characteristics of bisulfite conversion and real-time PCR (MethyLight) for quantitative DNA methylation analysis

Promoter methylation of ITF2, but not APC, is associated with microsatellite instability in two populations of colorectal cancer patients.

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

The genomic landscape of tuberous sclerosis complex

The relationship of DNA methylation with age, gender and genotype in twins and healthy controls

The somatic genomic landscape of glioblastoma

Tumor Budding in Colorectal Carcinoma: Confirmation of Prognostic Significance and Histologic Cutoff in a Population-based Cohort

Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue

cis-Expression QTL analysis of established colorectal cancer risk variants in colon tumors and adjacent normal tissue