List of works - Yanxun Xu

197. Inflammatory Differences in Multilayer Functional Network Topology Impacts Cognition in Psychosis

scientific article published in 2023

A Bayesian Graphical Model for Integrative Analysis of TCGA Data

scientific article

A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data.

scientific article

A Bayesian nonparametric approach for evaluating the causal effect of treatment in randomized trials with semi-competing risks

scientific article published on 04 April 2020

A Decision-Theoretic Comparison of Treatments to Resolve Air Leaks After Lung Surgery Based on Nonparametric Modeling

scientific article published on 26 July 2016

A nonparametric Bayesian basket trial design

scientific article published on 28 May 2018

ASIED: a Bayesian adaptive subgroup-identification enrichment design

scientific article published on 29 November 2019

Adaptive Bayesian Nonparametric Regression Using a Kernel Mixture of Polynomials with Application to Partial Linear Models

scholarly article

Assessing the clinical utility of cancer genomic and proteomic data across tumor types.

scientific article

Associations between Antiretroviral Drugs on Depressive Symptomatology in Homogenous Subgroups of Women with HIV

scientific article published on 13 January 2020

Associations between Antiretrovirals and Cognitive Function in Women with HIV

scientific article published on 24 March 2020

Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

scientific article published on 27 April 2020

BAREB: A Bayesian repulsive biclustering model for periodontal data

scientific article published on 03 April 2020

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data

scientific article

BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.

scientific article

BM-map: Bayesian mapping of multireads for next-generation sequencing data

scientific article

BayCount: A Bayesian decomposition method for inferring tumor heterogeneity using RNA-Seq counts

scholarly article

Bayesian Nonparametric Estimation for Dynamic Treatment Regimes with Sequential Transition Times. ⬇️

scientific article published on 18 October 2016

Bayesian Repulsive Gaussian Mixture Model

scholarly article

Bayesian inference for latent biologic structure with determinantal point processes (DPP). ⬇️

scientific article

Bayesian non-parametric survival regression for optimizing precision dosing of intravenous busulfan in allogeneic stem cell transplantation

scientific article published on 16 December 2018

Bayesian nonparametric statistics: A new toolkit for discovery in cancer research.

scientific article

Bayesian tensor-on-tensor regression with efficient computation

scholarly article

Brief Report: Higher Peripheral Monocyte Activation Markers Are Associated With Smaller Frontal and Temporal Cortical Volumes in Women With HIV

scientific article published on 01 May 2020

Characterizing Cancer-Specific Networks by Integrating TCGA Data

scientific article

Clinical Trial Design as a Decision Problem

scientific article published on 13 January 2017

Comprehensive Characterization of Molecular Differences in Cancer between Male and Female Patients

scientific article published on May 2016

Comprehensive molecular characterization of mitochondrial genomes in human cancers

scientific article published on 05 February 2020

Early Inflammatory Signatures Predict Subsequent Cognition in Long-Term Virally Suppressed Women With HIV

scientific article published on 24 April 2020

Enter the Matrix: Factorization Uncovers Knowledge from Omics

scientific article published on 22 August 2018

Enter the matrix: factorization uncovers knowledge from omics

Factors Predicting Detrimental Change in Declarative Memory Among Women With HIV: A Study of Heterogeneity in Cognition

scientific article published on 15 October 2020

Integrase Strand Transfer Inhibitor Start or Switch Impacts Learning in Women with HIV

scientific article published on 21 December 2020

MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling ⬇️

scientific article

Multivariate relationships between peripheral inflammatory marker subtypes and cognitive and brain structural measures in psychosis

scientific article published on 15 October 2020

Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data

scientific article published on December 2013

Personalized Dynamic Treatment Regimes in Continuous Time: A Bayesian Approach for Optimizing Clinical Decisions with Timing

scientific article published in 2022

Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data

scientific article

Prediction of lung cancer risk at follow-up screening with low-dose CT: a training and validation study of a deep learning method

scientific article published on 17 October 2019

Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

scientific article published on 11 February 2020

Sex Differences in Neurocognitive Function in Adults with HIV: Patterns, Predictors, and Mechanisms

scientific article published on 14 September 2019

Sex-specific associations between cerebrospinal fluid inflammatory marker levels and cognitive function in antiretroviral treated people living with HIV in rural Uganda

scientific article published on 24 December 2020

Starting or Switching to an Integrase Inhibitor-Based Regimen Affects PTSD Symptoms in Women with HIV

scientific article published on 07 July 2020

Subgroup-Based Adaptive (SUBA) Designs for Multi-Arm Biomarker Trials ⬇️

scientific article published on 17 July 2014

T-cell activation state differentially contributes to neuropsychiatric complications in women with HIV

scientific article published in 2022

TCGA-Assembler 2: Software Pipeline for Retrieval and Processing of TCGA/CPTAC Data.

scientific article published on 20 December 2017

The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes

scientific article

Toward breaking the histone code: bayesian graphical models for histone modifications

scientific article published on 7 June 2013

Weight and body mass index change after switching to integrase inhibitors or tenofovir alafenamide among women living with HIV

scientific article published on 24 November 2020

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

scientific article

modSaRa: a computationally efficient R package for CNV identification

scientific article published on 26 April 2017

List of works by Yanxun Xu

197. Inflammatory Differences in Multilayer Functional Network Topology Impacts Cognition in Psychosis

A Bayesian Graphical Model for Integrative Analysis of TCGA Data

A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data.

A Bayesian nonparametric approach for evaluating the causal effect of treatment in randomized trials with semi-competing risks

A Decision-Theoretic Comparison of Treatments to Resolve Air Leaks After Lung Surgery Based on Nonparametric Modeling

A nonparametric Bayesian basket trial design

ASIED: a Bayesian adaptive subgroup-identification enrichment design

Adaptive Bayesian Nonparametric Regression Using a Kernel Mixture of Polynomials with Application to Partial Linear Models

Assessing the clinical utility of cancer genomic and proteomic data across tumor types.

Associations between Antiretroviral Drugs on Depressive Symptomatology in Homogenous Subgroups of Women with HIV

Associations between Antiretrovirals and Cognitive Function in Women with HIV

Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

BAREB: A Bayesian repulsive biclustering model for periodontal data

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data

BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.

BM-map: Bayesian mapping of multireads for next-generation sequencing data

BayCount: A Bayesian decomposition method for inferring tumor heterogeneity using RNA-Seq counts

Bayesian Nonparametric Estimation for Dynamic Treatment Regimes with Sequential Transition Times. ⬇️

Bayesian Repulsive Gaussian Mixture Model

Bayesian inference for latent biologic structure with determinantal point processes (DPP). ⬇️

Bayesian non-parametric survival regression for optimizing precision dosing of intravenous busulfan in allogeneic stem cell transplantation

Bayesian nonparametric statistics: A new toolkit for discovery in cancer research.

Bayesian tensor-on-tensor regression with efficient computation

Brief Report: Higher Peripheral Monocyte Activation Markers Are Associated With Smaller Frontal and Temporal Cortical Volumes in Women With HIV

Characterizing Cancer-Specific Networks by Integrating TCGA Data

Clinical Trial Design as a Decision Problem

Comprehensive Characterization of Molecular Differences in Cancer between Male and Female Patients

Comprehensive molecular characterization of mitochondrial genomes in human cancers

Early Inflammatory Signatures Predict Subsequent Cognition in Long-Term Virally Suppressed Women With HIV

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Enter the matrix: factorization uncovers knowledge from omics

Factors Predicting Detrimental Change in Declarative Memory Among Women With HIV: A Study of Heterogeneity in Cognition

Integrase Strand Transfer Inhibitor Start or Switch Impacts Learning in Women with HIV

MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling ⬇️

Multivariate relationships between peripheral inflammatory marker subtypes and cognitive and brain structural measures in psychosis

Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data

Personalized Dynamic Treatment Regimes in Continuous Time: A Bayesian Approach for Optimizing Clinical Decisions with Timing

Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data

Prediction of lung cancer risk at follow-up screening with low-dose CT: a training and validation study of a deep learning method

Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers

Sex Differences in Neurocognitive Function in Adults with HIV: Patterns, Predictors, and Mechanisms

Sex-specific associations between cerebrospinal fluid inflammatory marker levels and cognitive function in antiretroviral treated people living with HIV in rural Uganda

Starting or Switching to an Integrase Inhibitor-Based Regimen Affects PTSD Symptoms in Women with HIV

Subgroup-Based Adaptive (SUBA) Designs for Multi-Arm Biomarker Trials ⬇️

T-cell activation state differentially contributes to neuropsychiatric complications in women with HIV

TCGA-Assembler 2: Software Pipeline for Retrieval and Processing of TCGA/CPTAC Data.

The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes

Toward breaking the histone code: bayesian graphical models for histone modifications

Weight and body mass index change after switching to integrase inhibitors or tenofovir alafenamide among women living with HIV

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

modSaRa: a computationally efficient R package for CNV identification