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List of works by Moriya Ohkuma

<i>Conexivisphaera calida</i> gen. nov., sp. nov., a thermophilic sulfur- and iron-reducing archaeon, and proposal of <i>Conexivisphaeraceae</i> fam. nov., <i>Conexivisphaerales</i> ord. nov., and <i>Conexivisphaeria</i> class. nov. in the phylum <i

scientific article published on 09 December 2020

A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes

scientific article published on 13 October 2017

A great leap forward in microbial ecology.

scientific article published on January 2010

A heavy metal tolerant novel bacterium, Bacillus malikii sp. nov., isolated from tannery effluent wastewater

scientific article

A heavy-metal tolerant novel bacterium, Alcaligenes pakistanensis sp. nov., isolated from industrial effluent in Pakistan

scientific article

A novel ascosporogenous yeast species, Zygosaccharomyces siamensis, and the sugar tolerant yeasts associated with raw honey collected in Thailand ⬇️

scientific article published on 24 July 2011

Acetobacter okinawensis sp. nov., Acetobacter papayae sp. nov., and Acetobacter persicus sp. nov.; novel acetic acid bacteria isolated from stems of sugarcane, fruits, and a flower in Japan ⬇️

scientific article published on January 1, 2012

Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist

scientific article

Aciditerrimonas ferrireducens gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field

scientific article

Actinomadura apis sp. nov., isolated from a honey bee (Apis mellifera) hive, and the reclassification of Actinomadura cremea subsp. rifamycini Gauze et al. 1987 as Actinomadura rifamycini (Gauze et al. 1987) sp. nov., comb. nov ⬇️

scientific article published on October 15, 2010

Actinomadura montaniterrae sp. nov., isolated from mountain soil

scientific article

Actinomadura rayongensis sp. nov., isolated from peat swamp forest soil

scientific article

Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces

scholarly article published in 2021

Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae

scientific article

Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococ

scientific article

Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan

scientific article published in July 2019

Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.

scientific article

Allodekkera sacchari gen. nov., sp. nov., a yeast species in the Saccharomycetales isolated from a sugar factory

scientific article

Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov

scientific article published on 14 May 2020

Amycolatopsis stemonae sp. nov., isolated from Thai medicinal plant

scientific article

Analysis of microbiota associated with peri-implantitis using 16S rRNA gene clone library ⬇️

scientific article published on May 24, 2010

Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont

scientific article published in July 2014

Athalassotoga saccharophila gen. nov. sp. nov. isolated from an acidic terrestrial hot spring of Japan, and proposal of Mesoaciditogales ord. nov., Mesoaciditogaceae fam. nov. in the phylum Thermotogae.

scientific article

Bacillus piscicola sp.nov., isolated from Thai fish sauce (Nam-pla).

scientific article

Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from caecum of an Indonesian chicken

scientific article

Bacteroides caecigallinarum sp. nov., isolated from caecum of an Indonesian chicken

scientific article

Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces

scientific article

Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus).

scientific article

Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority

scientific article

Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces ⬇️

scientific article published on July 1, 2011

Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla).

scientific article

Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas.

scientific article

Ca2+ in Hybridization Solutions for Fluorescence in situ Hybridization Facilitates the Detection of Enterobacteriaceae.

scientific article

Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut.

scientific article

Candidatus Methanogranum caenicola: a novel methanogen from the anaerobic digested sludge, and proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a methanogenic lineage of the class Thermoplasmata

scientific article

Candidatus Symbiothrix dinenymphae: bristle-like Bacteroidales ectosymbionts of termite gut protists.

scientific article published in October 2007

Cellulomonas pakistanensis sp. nov., a moderately halotolerant Actinobacteria

scientific article

Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers

scientific article published on 01 January 2021

Characterization of the Lactobacillus casei group based on the profiling of ribosomal proteins coded in S10-spc-alpha operons as observed by MALDI-TOF MS ⬇️

scientific article published on October 23, 2012

Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan

scientific article published on 02 December 2019

Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage

scientific article published on 16 October 2017

Clostridium zeae sp. nov., isolated from corn silage

scholarly article published in 2021

Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria

scientific article

Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov.

scientific article published in April 2019

Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA.

scientific article published on 15 September 2016

Comparison of bacterial communities in the alkaline gut segment among various species of higher termites

scientific article published on 26 April 2005

Comparison of four protein phylogeny of parabasalian symbionts in termite guts

scientific article published on 7 October 2006

Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male

scientific article published on 13 February 2020

Complete Genome Sequence of Blautia producta JCM 1471T

scientific article published on 23 April 2020

Complete Genome Sequence of Collinsella aerofaciens JCM 10188T

scientific article published on 16 April 2020

Complete Genome Sequence of Ferriphaselus amnicola Strain OYT1, a Neutrophilic, Stalk-Forming, Iron-Oxidizing Bacterium

scientific article published on 27 September 2018

Complete Genome Sequence of Flavonifractor plautii JCM 32125T

scientific article published on 23 April 2020

Complete Genome Sequence of Megamonas funiformis JCM 14723T

scientific article published on 16 April 2020

Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces

scholarly article published January 2019

Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi

scientific article published on 29 May 2012

Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell

scholarly article

Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites

scientific article published on 9 July 2009

Comprehensive microbiological findings in peri-implantitis and periodontitis.

scientific article

Correction: Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions

scientific article

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

scientific article published on 31 October 2017

Cryptococcus terricola is a promising oleaginous yeast for biodiesel production from starch through consolidated bioprocessing

scientific article published on 24 April 2014

Cutibacterium modestum sp. nov., isolated from meibum of human meibomian glands, and emended descriptions of Cutibacterium granulosum and Cutibacterium namnetense

scientific article published on 01 April 2020

DNA rearrangement has occurred in the carbazole-degradative plasmid pCAR1 and the chromosome of its unsuitable host, Pseudomonas fluorescens Pf0-1.

scientific article

Dactylosporangium sucinum sp. nov., isolated from Thai peat swamp forest soil

scientific article

Defensive bacteriome symbiont with a drastically reduced genome.

scientific article published on 11 July 2013

Deinococcus citri sp. nov., isolated from citrus leaf canker lesions

scientific article

Description of Lactobacillus iwatensis sp. nov., isolated from orchardgrass (Dactylis glomerata L.) silage, and Lactobacillus backii sp. nov ⬇️

scientific article published on May 17, 2013

Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and descript

scientific article

Determination of Plasmid pSN1216-29 Host Range and the Similarity in Oligonucleotide Composition Between Plasmid and Host Chromosomes

scientific article published on 09 June 2020

Dialister hominis sp. nov., isolated from human faeces

scientific article

Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions

scientific article published on 12 October 2017

Dioszegia rishiriensis sp. nov., a novel yeast species from soil collected on Rishiri Island, Hokkaido, Japan

scientific article

Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites

scientific article

Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov.

scientific article published on 30 September 2015

Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes.

scientific article

Diverse bacteria related to the bacteroides subgroup of the CFB phylum within the gut symbiotic communities of various termites

scientific article published in January 2002

Division of functional roles for termite gut protists revealed by single-cell transcriptomes

scientific article published on 08 June 2020

Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose

scientific article published on 16 June 2015

Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite

scientific article published on 13 February 2014

Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.

scientific article published on 20 February 2014

Draft Genome Sequence of Cytophaga fermentans JCM 21142T, a Facultative Anaerobe Isolated from Marine Mud.

scientific article published on 27 March 2014

Draft Genome Sequence of Faecalimonas umbilicata JCM 30896T, an Acetate-Producing Bacterium Isolated from Human Feces

scientific article published on 06 September 2018

Draft Genome Sequence of Lactobacillus sucicola JCM 15457T, a Motile Lactic Acid Bacterium Isolated from Oak Sap.

scientific article

Draft Genome Sequence of Lactococcus sp. Strain NtB2 (JCM 32569), Isolated from the Gut of the Higher Termite Nasutitermes takasagoensis.

scientific article

Draft Genome Sequence of Lactococcus sp. Strain Rs-Y01, Isolated from the Gut of the Lower Termite Reticulitermes speratus.

scientific article published on 21 September 2017

Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166T, a Butyrate-Producing Bacterium, Isolated from Human Feces.

scientific article

Draft Genome Sequence of Marine Flavobacterium Jejuia pallidilutea Strain 11shimoA1 and Pigmentation Mutants

scientific article

Draft Genome Sequence of Mesosutterella multiformis JCM 32464T, a Member of the Family Sutterellaceae, Isolated from Human Feces

scientific article published on 13 June 2019

Draft Genome Sequence of Novel Metschnikowia sp. Strain JCM 33374, a Nectar Yeast Isolated from a Bumblebee

scientific article published on 12 September 2019

Draft Genome Sequence of Paenibacillus pini JCM 16418T, Isolated from the Rhizosphere of Pine Tree

scientific article published on 20 March 2014

Draft Genome Sequence of Raffaelea quercivora JCM 11526, a Japanese Oak Wilt Pathogen Associated with the Platypodid Beetle, Platypus quercivorus

scientific article published on 28 July 2016

Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite

scientific article published on 23 January 2014

Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium Gracilibacillus boraciitolerans JCM 21714T

scientific article published on 20 February 2014

Draft Genome Sequence of the Causative Antigen of Summer-Type Hypersensitivity Pneumonitis, Trichosporon domesticum JCM 9580

scientific article

Draft Genome Sequences of Basidiomycetous Epiphytic Phylloplane Yeast Type Strains Dioszegia crocea JCM 2961 and Dioszegia aurantiaca JCM 2956

scientific article published on 27 June 2019

Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples

scientific article

Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4.

scientific article

Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13.

scientific article

Draft Genome Sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T.

scientific article

Draft Genome Sequences of Porphyromonas crevioricanis JCM 15906T and Porphyromonas cansulci JCM 13913T Isolated from a Canine Oral Cavity.

scientific article published on 25 July 2013

Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T.

scientific article published on 30 January 2014

Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine

scientific article published on 30 January 2014

Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shōchū Residue

scientific article published on 27 March 2014

Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota

scientific article

Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod

scientific article

Draft Genome Sequences of the Oomycete Pilasporangium apinafurcum Strains JCM 30513 and JCM 30514, Formerly Classified as Pythium apinafurcum

scientific article published on 31 August 2017

Dysgonomonas termitidis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus.

scientific article

Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis

scientific article published on 01 February 2019

Endosymbiotic Bacteroidales bacteria of the flagellated protist Pseudotrichonympha grassii in the gut of the termite Coptotermes formosanus

scientific article

Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver

scientific article

Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment ⬇️

scientific article published on April 25, 2003

Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosms

scientific article published on 12 May 2011

Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb

scientific article

Fermentation Characteristics and Microbial Diversity of Tropical Grass-legumes Silages.

scientific article

Ferriphaselus amnicola gen. nov., sp. nov., a neutrophilic, stalk-forming, iron-oxidizing bacterium isolated from an iron-rich groundwater seep

scientific article

Filobacterium rodentium gen. nov., sp. nov., a member of Filobacteriaceae fam. nov. within the phylum Bacteroidetes; includes a microaerobic filamentous bacterium isolated from specimens from diseased rodent respiratory tracts.

scientific article published on 16 October 2015

Functional Gene Analysis of Freshwater Iron-Rich Flocs at Circumneutral pH and Isolation of a Stalk-Forming Microaerophilic Iron-Oxidizing Bacterium ⬇️

scientific article published on June 28, 2013

Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut

scientific article published on 04 October 2018

Genome and transcriptome evolve separately in recently hybridized fungi

Genome of 'Ca. Desulfovibrio trichonymphae', an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut.

scientific article

Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.

scientific article

Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.

scientific article published on 13 April 2022

Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri.

scientific article

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage

scientific article published on 26 July 2011

Gibbsiella papilionis Kim et al. 2013 is a later heterotypic synonym of Gibbsiella dentisursi Saito et al. 2013.

scientific article

Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, and visualization system for microbial resources

scientific article

Global deceleration of gene evolution following recent genome hybridizations in fungi

scientific article

Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar ⬇️

scientific article published on August 12, 2011

Halarchaeum nitratireducens sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt ⬇️

scientific article published on June 14, 2013

Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples ⬇️

scientific article published on February 22, 2013

Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt

scientific article published on 23 October 2020

Halocalculus aciditolerans gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt

scientific article

Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt

scientific article

Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium

scientific article

Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt

scientific article

Heterocephalacria mucosa sp. nov., a new basidiomycetous yeast species isolated from a mangrove forest in Thailand

scientific article published in September 2019

High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum

scientific article

High-Resolution Comparison of Bacterial Conjugation Frequencies

scientific article published on 10 January 2019

Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector

scientific article

Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127

scientific article published on 19 March 2019

Host-Symbiont Cospeciation of Termite-Gut Cellulolytic Protists of the Genera Teranympha and Eucomonympha and their Treponema Endosymbionts

scientific article published on 24 January 2018

Hydrogen production by termite gut protists: characterization of iron hydrogenases of Parabasalian symbionts of the termite Coptotermes formosanus

scientific article published on 31 August 2007

Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach

scientific article published in January 2006

Identification and classification of the genus Bacteroides by multilocus sequence analysis.

scientific article published on 21 September 2011

Identification of Endosymbiotic Methanogen and Ectosymbiotic Spirochetes of Gut Protists of the Termite Coptotermes formosanus

scientific article published on 01 January 2008

In situ hybridization of termite microbes

scientific article published in January 2007

Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes

scientific article published on 29 July 2020

Inheritance and diversification of symbiotic trichonymphid flagellates from a common ancestor of termites and the cockroach Cryptocercus

scientific article published in January 2009

Integration of large heterologous DNA fragments into the genome of Thermococcus kodakarensis

scientific article published on 28 February 2020

Interaction of Bacterial Membrane Vesicles with Specific Species and Their Potential for Delivery to Target Cells

scientific article published on 7 April 2017

Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host

scientific article

Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut.

scientific article

Iodidimonas muriae gen. nov., sp. nov., an aerobic iodide-oxidizing bacterium isolated from brine of a natural gas and iodine recovery facility, and proposals of Iodidimonadaceae fam. nov., Iodidimonadales ord. nov., Emcibacteraceae fam. nov. and Em

scientific article

Isolation and Characterization of Anaerobic Bacteria for Symbiotic Recycling of Uric Acid Nitrogen in the Gut of Various Termites ⬇️

scientific article published on January 1, 2012

Isolation of Streptococcus gallolyticus with very high degradability of condensed tannins from feces of the wild Japanese rock ptarmigans on Mt. Tateyama

scientific article published on 07 April 2017

Kushneria pakistanensis sp. nov., a novel moderately halophilic bacterium isolated from rhizosphere of a plant (Saccharum spontaneum) growing in salt mines of the Karak area in Pakistan

scientific article

Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage

scientific article published on 06 April 2020

Lactobacillus faecis sp. nov., isolated from animal faeces.

scientific article

Lactobacillus floricola sp. nov., lactic acid bacteria isolated from mountain flowers.

scientific article

Lactobacillus furfuricola sp. nov., isolated from Nukadoko, rice bran paste for Japanese pickles

scientific article

Lactobacillus gorillae sp. nov., isolated from the faeces of captive and wild western lowland gorillas (Gorilla gorilla gorilla).

scientific article

Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage

scientific article

Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti.

scientific article published on 15 March 2018

Lactobacillus mixtipabuli sp. nov. isolated from total mixed ration silage

scientific article

Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus)

scientific article published on 27 April 2021

Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus ⬇️

scientific article published on July 1, 2011

Lactobacillus oryzae sp. nov., isolated from fermented rice grain (Oryza sativa L. subsp. japonica) ⬇️

scientific article published on February 1, 2013

Lactobacillus ozensis sp. nov., isolated from mountain flowers.

scientific article

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses

scientific article published on 18 September 2018

Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates

scientific article published in April 2019

Lactobacillus silagei sp. nov., isolated from orchardgrass silage ⬇️

scientific article published on August 6, 2013

Lactobacillus silagincola sp. nov. and Lactobacillus pentosiphilus sp. nov., isolated from silage

scientific article

Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedti

scientific article published on 02 July 2020

Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus.

scientific article published on 4 January 2018

Lactococcus termiticola sp. nov., isolated from the gut of the wood-feeding higher termite Nasutitermes takasagoensis

scientific article published on 15 October 2018

Large-scale identification of transcripts expressed in a symbiotic fungus (Termitomyces) during plant biomass degradation

scientific article published on 5 October 2006

Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces

scientific article published on 10 May 2018

Lentilactobacillus fungorum sp. nov., isolated from spent mushroom substrates

scholarly article published in 2021

Lipid production through simultaneous utilization of glucose, xylose, and L-arabinose by Pseudozyma hubeiensis: a comparative screening study

scientific article

Lipid production via simultaneous conversion of glucose and xylose by a novel yeast, Cystobasidium iriomotense

scientific article published in PLoS ONE

Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters ⬇️

scientific article published on December 16, 2011

Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces

scientific article published on 05 November 2018

Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits

scientific article published on 03 August 2019

Microbial interaction between the succinate-utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron

scientific article published on 28 August 2020

Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton

scientific article published on 30 August 2018

Micromonospora sediminis sp. nov., isolated from mangrove sediment

scientific article

Molecular Phylogenetic Position of Microjoenia (Parabasalia: Spirotrichonymphea) from Reticulitermes and Hodotermopsis Termite Hosts

scholarly article published in 2021

Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae)

scientific article published on 01 May 2003

Molecular cloning and characterization of a cellulase gene from a symbiotic protist of the lower termite, Coptotermes formosanus

scientific article

Molecular identification and phylogenetic relationships of trichomonad isolates of galliform birds inferred from nuclear small subunit rRNA gene sequences

scientific article published on 6 October 2009

Molecular phylogenetic analyses based on the nuclear rRNA genes and the intron–exon structures of the nuSSU rRNA gene in Dictyocatenulata alba (anamorphic Ascomycota) ⬇️

scientific article published on September 11, 2012

Molecular phylogeny of Asian termites (Isoptera) of the families Termitidae and Rhinotermitidae based on mitochondrial COII sequences

scientific article

Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Devescovinidae and Calonymphidae (Trichomonadea).

scientific article published in December 2002

Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution

scientific article published on 21 March 2009

Morphological and molecular identification of non-Tritrichomonas foetus trichomonad protozoa from the bovine preputial cavity.

scientific article published in March 2007

Multilamellar and multivesicular outer membrane vesicles produced by a Buttiauxella agrestis tolB mutant

scientific article published on 14 August 2020

Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae Prototheca

scientific article published on 17 January 2018

Mycobacterial biomaterials and resources for researchers

scientific article published on 01 June 2018

Neotabrizicola shimadae gen. nov., sp. nov., an aerobic anoxygenic phototrophic bacterium harbouring photosynthetic genes in the family Rhodobacteraceae, isolated from a terrestrial hot spring ⬇️

scientific article published on 5 April 2022

Nitrogen fixation and nifH diversity in human gut microbiota.

scientific article published on 24 August 2016

Nocardia aurantiaca sp. nov., isolated from soil in Thailand

scientific article published on 08 September 2020

Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil

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Nonomuraea phyllanthi sp. nov., an endophytic actinomycete isolated from the leaf of Phyllanthus amarus

scientific article published on 28 August 2019

Nonomuraea rhodomycinica sp. nov., isolated from peat swamp forest soil in Thailand

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Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure

scientific article published on 06 November 2018

Novel urease-negative basidiomycetous yeast, Trichosporon heliocopridis sp. nov., associated with dung beetles (Heliocopris bucephalus Fabricius) in the north of Thailand

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Occultifur plantarum f.a., sp. nov., a novel cystobasidiomycetous yeast species

scientific article published on 4 August 2017

Occurrence of two novel linear penta-amines, pyropentamine and homopyropentamine, in extremely thermophilic Thermus composti

scientific article published on 22 November 2016

Paenibacillus silagei sp. nov. isolated from corn silage

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ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids

scientific article published on 28 August 2012

Parabacteroides chinchillae sp. nov., isolated from chinchilla (Chincilla lanigera) faeces.

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Parabacteroides faecis sp. nov., isolated from human faeces.

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Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches.

scientific article published in June 2018

Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut

scientific article published on 01 June 2020

Parolsenella catena gen. nov., sp. nov., isolated from human faeces

scientific article published on 15 February 2018

Phylogenetic Diversity and Single-Cell Genome Analysis of "Melainabacteria", a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut

scientific article published on 8 February 2018

Phylogenetic and morphological diversity of Bacteroidales members associated with the gut wall of termites

scientific article published in January 2006

Phylogenetic diversity, localization, and cell morphologies of members of the candidate phylum TG3 and a subphylum in the phylum Fibrobacteres, recently discovered bacterial groups dominant in termite guts

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Phylogenetic position and in situ identification of ectosymbiotic spirochetes on protists in the termite gut.

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Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority

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Porphyromonas pasteri sp. nov., isolated from human saliva.

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Potential for biogeochemical cycling of sulfur, iron and carbon within massive sulfide deposits below the seafloor

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Prevotella hominis sp. nov., isolated from human faeces

scientific article published on 22 July 2020

Prevotella lacticifex sp. nov., isolated from the rumen of cows

scientific article published on 7 March 2022

Prolixibacter denitrificans sp. nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus Prolixibacter and Prolixibacter bellariivorans.

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Proposal of new combination, Cutibacterium acnes subsp. elongatum comb. nov., and emended descriptions of the genus Cutibacterium, Cutibacterium acnes subsp. acnes and Cutibacterium acnes subsp. defendens

scientific article published in April 2019

Reclassification of Clostridium diolis Biebl and Spröer 2003 as a later heterotypic synonym of Clostridium beijerinckii Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001

scientific article published on 18 February 2020

Reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius ⬇️

scientific article published on November 18, 2011

Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994

scientific article published on 12 December 2018

Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella

scientific article published on 23 December 2011

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales

scientific article published on 23 April 2019

Rice Bran Amendment Suppresses Potato Common Scab by Increasing Antagonistic Bacterial Community Levels in the Rhizosphere

scientific article published on 13 May 2016

Screening and evolution of a novel protist xylose isomerase from the termite Reticulitermes speratus for efficient xylose fermentation in Saccharomyces cerevisiae

scientific article published on 23 August 2017

Selection of Orthologous Genes for Construction of a Highly Resolved Phylogenetic Tree and Clarification of the Phylogeny of Trichosporonales Species

scientific article published on 4 August 2015

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names

scientific article published on 11 February 2013

Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.

scientific article published on 18 October 2013

Spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and the bacterial community colonizing the gut epithelium.

scientific article published in October 2005

Sporolactobacillus shoreae sp. nov. and Sporolactobacillus spathodeae sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand

scientific article published on 29 January 2015

Sporomusa intestinalis sp. nov., a homoacetogenic bacterium isolated from the gut of a higher termite, Termes comis (Termitinae).

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Streptomyces actinomycinicus sp. nov., isolated from soil of a peat swamp forest

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Streptomyces chiangmaiensis sp. nov. and Streptomyces lannensis sp. nov., isolated from the South-East Asian stingless bee (Tetragonilla collina)

scientific article published on September 21, 2012

Streptomyces chumphonensis sp. nov., isolated from marine sediments

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Streptomyces mimosae sp. nov., an endophytic actinomycete isolated from the root of Mimosa pudica in Thailand

scientific article published on 29 April 2020

Streptomyces palmae sp. nov., isolated from oil palm (Elaeis guineensis) rhizosphere soil

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Streptomyces phyllanthi sp. nov., isolated from the stem of Phyllanthus amarus

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Streptomyces verrucosisporus sp. nov., isolated from marine sediments

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Stress Response of <i>Mesosutterella multiformis</i> Mediated by Nitrate Reduction

scientific article published on 15 December 2020

Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.

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Symbiotic complex in the termite gut microbial community

scientific article published in November 2008

Taxonomic richness of yeasts in Japan within subtropical and cool temperate areas ⬇️

scientific article published on November 30, 2012

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

scientific article published on 08 November 2018

The candidate phylum 'Termite Group 1' of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists

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The motility symbiont of the termite gut flagellate Caduceia versatilis is a member of the "Synergistes" group

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Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring

scientific article published on 28 November 2019

Two new species of the genus Candida in the Zygoascus clade, Candida lundiana sp. nov. and Candida suthepensis sp. nov., isolated from raw honey in Thailand ⬇️

scientific article published on November 22, 2011

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements

scientific article published on 29 April 2021

Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.

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Virgibacillus kapii sp. nov., isolated from Thai shrimp paste (Ka-pi).

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Weissella oryzae sp. nov., isolated from fermented rice grains

scientific article published on July 27, 2012

World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide

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