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List of works by André Fujita

A Statistical Method to Distinguish Functional Brain Networks

scientific article published on 14 February 2017

A comparative study of statistical methods used to identify dependencies between gene expression signals

scientific article published on 20 August 2013

A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets

scientific article published on 21 July 2010

A hemolytic-uremic syndrome-associated strain O113:H21 Shiga toxin-producing Escherichia coli specifically expresses a transcriptional module containing dicA and is related to gene network dysregulation in Caco-2 cells

scientific article published on 18 December 2017

A non-parametric statistical test to compare clusters with applications in functional magnetic resonance imaging data

scientific article

A tutorial to identify nonlinear associations in gene expression time series data

scientific article

ANOCVA in R: A Software to Compare Clusters between Groups and Its Application to the Study of Autism Spectrum Disorder

scientific article

Abnormal Cortico-Cerebellar Functional Connectivity in Autism Spectrum Disorder

An fMRI normative database for connectivity networks using one-class support vector machines

scientific article published in April 2009

Analysis of the Salivary Gland Transcriptome of Unfed and Partially Fed Amblyomma sculptum Ticks and Descriptive Proteome of the Saliva

scientific article

Analyzing the connectivity between regions of interest: an approach based on cluster Granger causality for fMRI data analysis

scientific article

Association Between Short-Term Systolic Blood Pressure Variability and Carotid Intima-Media Thickness in ELSA-Brasil Baseline

scientific article published on 5 May 2017

BioNetStat: A Tool for Biological Networks Differential Analysis

scientific article published on 21 June 2019

CHD7 promotes glioblastoma cell motility and invasiveness through transcriptional modulation of an invasion signature

article by Raquel A C Machado et al published 8 March 2019 in Scientific Reports

CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra.

scientific article published on 27 August 2015

Collocation-based sparse estimation for constructing dynamic gene networks

scientific article published on January 1, 2010

Comparing Pearson, Spearman and Hoeffding's D measure for gene expression association analysis

scientific article published in August 2009

Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR

scientific article published on January 1, 2010

Complex network measures in Autism Spectrum Disorders. ⬇️

scientific article published on 3 September 2015

DWT-CEM: an algorithm for scale-temporal clustering in fMRI.

scientific article

Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients.

scientific article published on 7 April 2016

Discriminating different classes of biological networks by analyzing the graphs spectra distribution

scientific article

Draft Genome Sequence of the Polyhydroxyalkanoate-Producing Bacterium Burkholderia sacchari LMG 19450 Isolated from Brazilian Sugarcane Plantation Soil.

scientific article published on 7 May 2015

Dynamic Gene Network Analysis of Caco-2 Cell Response to Shiga Toxin-Producing Escherichia coli-Associated Hemolytic-Uremic Syndrome

scientific article published on 08 July 2019

Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs

scientific article

Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data.

scientific article

Evaluating SVM and MLDA in the extraction of discriminant regions for mental state prediction

scientific article published on 31 January 2009

Evaluating different methods of microarray data normalization

scientific article

Evaluation of Pattern Recognition and Feature Extraction Methods in ADHD Prediction ⬇️

scientific article published on September 24, 2012

Evans blue as a simple method to discriminate mosquitoes' feeding choice on small laboratory animals

scientific article

Fluorescence-based method is more accurate than counting-based methods for plotting growth curves of adherent cells

scientific article published on 04 February 2020

Functional clustering of time series gene expression data by Granger causality

scientific article

GEDI: a user-friendly toolbox for analysis of large-scale gene expression data.

scientific article

Gene expression and promoter methylation of angiogenic and lymphangiogenic factors as prognostic markers in melanoma.

scientific article published on 25 May 2019

Gene expression data analysis: microarrays and regulatory networks modelling ⬇️

academic thesis

HLA-G is upregulated in advanced endometriosis

scientific article published on 06 February 2019

High CD90 (THY-1) expression positively correlates with cell transformation and worse prognosis in basal-like breast cancer tumors. ⬇️

scientific article published on 27 June 2018

Hyperplane navigation: a method to set individual scores in fMRI group datasets

scientific article

Identification of alterations associated with age in the clustering structure of functional brain networks. ⬇️

scientific article

Identification of segregated regions in the functional brain connectome of autistic patients by a combination of fuzzy spectral clustering and entropy analysis

scientific article published on 27 October 2015

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.

scientific article

Inferring contagion in regulatory networks.

scientific article published on March 2011

Large miRNA survival analysis reveals a prognostic four-biomarker signature for triple negative breast cancer

scientific article published on 02 March 2020

Maximum-uncertainty linear discrimination analysis of first-episode schizophrenia subjects

scientific article published on 04 February 2011

Measuring network's entropy in ADHD: a new approach to investigate neuropsychiatric disorders

scientific article published on 6 April 2013

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

scientific article published on 19 October 2010

Modeling gene expression regulatory networks with the sparse vector autoregressive model

scientific article

Modeling nonlinear gene regulatory networks from time series gene expression data

scientific article

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates

scientific article

Natural blood feeding and temperature shift modulate the global transcriptional profile of Rickettsia rickettsii infecting its tick vector

scientific article

New insights in osteogenic differentiation revealed by mass spectrometric assessment of phosphorylated substrates in murine skin mesenchymal cells

scientific article

Noninvasive prenatal paternity determination using microhaplotypes: a pilot study

scientific article published on 23 October 2020

Potential Confounders in the Analysis of Brazilian Adolescent's Health: A Combination of Machine Learning and Graph Theory

scientific article published on 21 December 2019

Prolactin protects against cytokine-induced beta cell death by NFkB and JNK inhibition.

scientific article published on 9 April 2018

Prolactin protects against cytokine-induced beta-cell death by NFκB and JNK inhibition ⬇️

scholarly article

Quality control and reproducibility in DNA microarray experiments

scientific article published on 01 October 2009

RECK is not an independent prognostic marker for breast cancer

scientific article

Recursive regularization for inferring gene networks from time-course gene expression profiles

scientific article

Source and sink nodes in absence seizures

scientific article published in August 2016

Spontaneous hypothermia in human sepsis is a transient, self-limiting, and nonterminal response.

scientific article

Statistical Methods in Graphs: Parameter Estimation, Model Selection, and Hypothesis Test ⬇️

chapter from 'Mathematical Foundations and Applications of Graph Entropy' published in 2016

Systems biology model repository for macrophage pathway simulation

scientific article published on 19 April 2011

The Distinct Transcriptional Response of the Midgut of Amblyomma sculptum and Amblyomma aureolatum Ticks to Rickettsia rickettsii Correlates to Their Differences in Susceptibility to Infection

scientific article

The Transcriptome of the Salivary Glands of Amblyomma aureolatum Reveals the Antimicrobial Peptide Microplusin as an Important Factor for the Tick Protection Against Rickettsia rickettsii Infection

scientific article published on 03 May 2019

The impact of measurement errors in the identification of regulatory networks

scientific article

The intracellular bacterium Rickettsia rickettsii exerts an inhibitory effect on the apoptosis of tick cells

scientific article published on 01 December 2020

Transcriptional network analysis reveals that AT1 and AT2 angiotensin II receptors are both involved in the regulation of genes essential for glioma progression.

scientific article

Unveiling novel genes upregulated by both rhBMP2 and rhBMP7 during early osteoblastic transdifferentiation of C2C12 cells

scientific article

Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands

scientific article published on 10 June 2016

XiP: a computational environment to create, extend and share workflows.

scientific article

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