List of works - Susan Bassham

Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny

scientific article published on 10 September 2020

Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain

scientific article

Developmental timing differences underlie armor loss across threespine stickleback populations.

scientific article

Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes

scientific article published on 02 April 2015

Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages

scientific article

Evolution of the thyroid: anterior-posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression

scientific article published in May 2008

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

scientific article published on February 2012

Genome-wide SNP markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species

scientific article published on 01 January 2021

Highly Reproducible 16S Sequencing Facilitates Measurement of Host Genetic Influences on the Stickleback Gut Microbiome

scientific article published on 13 August 2019

Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut.

scientific article published on March 2017

Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes

scientific article published in 2022

Local de novo assembly of RAD paired-end contigs using short sequencing reads

scientific article (publication date: 13 April 2011)

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

scientific article

Remembering James Alan Bassham (1922-2012).

scientific article published on 19 November 2015

Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback

article

Response to May and Delany: We Never Said Wright was Wrong.

scientific article published on 29 August 2015

SNP discovery and genotyping for evolutionary genetics using RAD sequencing

scientific article

Seeing chordate evolution through the Ciona genome sequence

scientific article

Stacks: an analysis tool set for population genomics

scientific article published on 24 May 2013

The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica

scientific article published on 24 August 2005

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.

scientific article published on June 2013

List of works by Susan Bassham

Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny

Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain

Developmental timing differences underlie armor loss across threespine stickleback populations.

Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes

Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages

Evolution of the thyroid: anterior-posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

Genome-wide SNP markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species

Highly Reproducible 16S Sequencing Facilitates Measurement of Host Genetic Influences on the Stickleback Gut Microbiome

Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut.

Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes

Local de novo assembly of RAD paired-end contigs using short sequencing reads

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

Remembering James Alan Bassham (1922-2012).

Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback

Response to May and Delany: We Never Said Wright was Wrong.

SNP discovery and genotyping for evolutionary genetics using RAD sequencing

Seeing chordate evolution through the Ciona genome sequence

Stacks: an analysis tool set for population genomics

The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.