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List of works by Justin L. Sonnenburg

A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection

scientific article published on 26 July 2018

A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont

scientific article published on 01 February 2020

A Microbiota Assimilation

scientific article published on 01 November 2018

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites.

scientific article

A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism

scientific journal article

A metabolomics pipeline for the mechanistic interrogation of the gut microbiome

scientific article published in 2021

A randomized crossover trial on the effect of plant-based compared with animal-based meat on trimethylamine-N-oxide and cardiovascular disease risk factors in generally healthy adults: Study With Appetizing Plantfood-Meat Eating Alternative Trial (S

scientific article published on 11 August 2020

A small-molecule antivirulence agent for treating Clostridium difficile infection

scientific article published on 23 September 2015

A uniquely human consequence of domain-specific functional adaptation in a sialic acid-binding receptor

scientific article

An exclusive metabolic niche enables strain engraftment in the gut microbiota

scientific article published in Nature

Ancient human faeces reveal gut microbes of the past

scientific article published in 2021

Bacterially Derived Tryptamine Increases Mucus Release by Activating a Host Receptor in a Mouse Model of Inflammatory Bowel Disease

scientific article published on 13 November 2020

Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut

scientific article published in 2024

Bacteroides fragilis toxin expression enables lamina propria niche acquisition in the developing mouse gut

scientific article published on 2 January 2024

Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways

scientific article published on 27 October 2011

Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions

scientific article published on 08 July 2020

Bifidobacterium alters the gut microbiota and modulates the functional metabolism of T regulatory cells in the context of immune checkpoint blockade

scientific article published on 19 October 2020

Cardiometabolic Effects of Omnivorous vs Vegan Diets in Identical Twins

scientific article published on 30 November 2023

Characterization of the acid stability of glycosidically linked neuraminic acid: use in detecting de-N-acetyl-gangliosides in human melanoma

scientific article published on 7 March 2002

Commensal Microbes and Hair Follicle Morphogenesis Coordinately Drive Treg Migration into Neonatal Skin

scientific article

Community health care: therapeutic opportunities in the human microbiome.

scientific article published on April 2011

Competitively Selected Donor Fecal Microbiota Transplantation: Butyrate Concentration and Diversity as Measures of Donor Quality

scientific article published on 21 February 2018

Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice

scientific article published on February 2013

Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome

scientific article published on 21 August 2018

Correction: Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome

correction of an article published on 01 November 2020

Depletion of microbiome-derived molecules in the host using Clostridium genetics

scientific article published on 01 December 2019

Diet-induced extinctions in the gut microbiota compound over generations

scientific article

Diet-microbiota interactions as moderators of human metabolism

scientific article

Dynamic Light Scattering Microrheology Reveals Multiscale Viscoelasticity of Polymer Gels and Precious Biological Materials

scientific article published on 15 December 2017

Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation

scientific article published on 11 February 2020

Eating for two: how metabolism establishes interspecies interactions in the gut

scientific article published on October 2011

Editorial overview: insights into molecular mechanisms of microbiota

scientific article

Effects of sialic acid substitutions on recognition by Sambucus nigra agglutinin and Maackia amurensis hemagglutinin

scientific article published in April 2002

Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota

scientific article published on 19 January 2022

Functional genomic studies of the intestinal response to a foodborne enteropathogen in a humanized gnotobiotic mouse model

scientific article

Genetic Variation of the SusC/SusD Homologs from a Polysaccharide Utilization Locus Underlies Divergent Fructan Specificities and Functional Adaptation in Bacteroides thetaiotaomicron Strains.

scientific article published on 23 May 2018

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota

scientific article

Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host

scientific article (publication date: November 2006)

Getting a grip on things: how do communities of bacterial symbionts become established in our intestine?

scientific article

Gut Microbiota-Produced Tryptamine Activates an Epithelial G-Protein-Coupled Receptor to Increase Colonic Secretion

scientific article published on 01 June 2018

Gut microbes promote colonic serotonin production through an effect of short-chain fatty acids on enterochromaffin cells

scientific article

Gut microbes take their vitamins

scientific article published on January 2014

Gut microbiome transition across a lifestyle gradient in Himalaya

Gut microbiome transition across a lifestyle gradient in Himalaya

scientific article published on 15 November 2018

Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance

scientific article published on December 2014

Gut-microbiota-targeted diets modulate human immune status

scientific article published in August 2021

High-Throughput Stool Metaproteomics: Method and Application to Human Specimens

scientific article published on 30 June 2020

Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases

scientific article published on 27 January 2016

Host-bacterial mutualism in the human intestine

scientific article (publication date: 25 March 2005)

Host-centric proteomics of stool: a novel strategy focused on intestinal responses to the gut microbiota.

scientific article

In Vivo Wireless Sensors for Gut Microbiome Redox Monitoring

scientific article published on 21 October 2019

Individualized Responses of Gut Microbiota to Dietary Intervention Modeled in Humanized Mice

scientific article published on 6 September 2016

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

scientific article published on 05 June 2013

Intestinal IgA Regulates Expression of a Fructan Polysaccharide Utilization Locus in Colonizing Gut Commensal Bacteroides thetaiotaomicron

scientific article published on 05 November 2019

Klebsiella michiganensis transmission enhances resistance to Enterobacteriaceae gut invasion by nutrition competition

scientific article published on 20 January 2020

Lifestyle of Lactobacillus plantarum in the mouse caecum

scientific article

Links between environment, diet, and the hunter-gatherer microbiome

scholarly article by Gabriela K. Fragiadakis et al published 17 August 2018 in Gut microbes

Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight

scientific article published on 18 March 2020

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome

scientific article published on 10 September 2020

Mechanical Perturbations to the Gut Microbiota

Mechanistic insight into polysaccharide use within the intestinal microbiota.

scientific article published on March 2011

Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition

scientific article published in January 2024

Metabolome progression during early gut microbial colonization of gnotobiotic mice

scientific article published on 29 June 2015

Microbiology: Genetic pot luck

scientific article published in April 2010

Microbiome engineering

scientific article published on February 2015

Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model

scientific article published on 23 April 2018

Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens

scientific article published on September 2013

Modulation of a Circulating Uremic Solute via Rational Genetic Manipulation of the Gut Microbiota.

scientific article published on 24 November 2016

Molecular analysis of model gut microbiotas by imaging mass spectrometry and nanodesorption electrospray ionization reveals dietary metabolite transformations

scientific article

Monitoring host responses to the gut microbiota

scientific article published on 9 June 2015

Mucin-derived O-glycans supplemented to diet mitigate diverse microbiota perturbations

scientific article published on 21 October 2020

Multiple phase-variable mechanisms, including capsular polysaccharides, modify bacteriophage susceptibility in Bacteroides thetaiotaomicron

scholarly article published 15 January 2019

Nutrition: A personal forecast

scientific article published in December 2015

Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron

scientific article published on 29 June 2020

Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system.

scientific article

Production of α-galactosylceramide by a prominent member of the human gut microbiota ⬇️

scientific article (publication date: July 2013)

Proximal colon-derived O-glycosylated mucus encapsulates and modulates the microbiota

scientific article published on 01 October 2020

Pursuing Human-Relevant Gut Microbiota-Immune Interactions

scientific article published on 01 August 2019

Quantitative Imaging of Gut Microbiota Spatial Organization

scientific article published on 30 September 2015

Randomized controlled trial demonstrates response to a probiotic intervention for metabolic syndrome that may correspond to diet

scientific article published on 19 February 2023

Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction

scientific article published in January 2024

Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics

scientific article published in January 2024

Rapid evolution of binding specificities and expression patterns of inhibitory CD33-related Siglecs in primates

scientific article

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism

scientific article

Robust variation in infant gut microbiome assembly across a spectrum of lifestyles

scientific article published on 10 June 2022

Role for diet in normal gut barrier function: developing guidance within the framework of food-labeling regulations

scientific article published on 24 May 2019

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania.

scientific article

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders

scientific article published on 01 May 2019

Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

scientific article

Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates

scientific article

Symbiosis research, technology, and education: Proceedings of the 6th International Symbiosis Society Congress held in Madison Wisconsin, USA, August 2009

scientific article published on 30 June 2010

The Clinical Drug Ebselen Attenuates Inflammation and Promotes Microbiome Recovery in Mice after Antibiotic Treatment for CDI

scientific article published on 01 April 2020

The Enteric Two-Step: nutritional strategies of bacterial pathogens within the gut

scientific article

The Gut Microbiome: Connecting Spatial Organization to Function

scientific article published in April 2017

The Intestinal Microbiota and Viral Susceptibility ⬇️

scientific article published on April 27, 2011

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

article

The ancestral and industrialized gut microbiota and implications for human health

scientific article published on 01 June 2019

The effect of microbial colonization on the host proteome varies by gastrointestinal location

scientific article published on 17 November 2015

The emerging metabolic view of Clostridium difficile pathogenesis

scientific article published on 17 December 2016

The human intestinal microbiota and its relationship to energy balance

Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome.

scientific article

Unexpected effect of a Bacteroides conjugative transposon, CTnDOT, on chromosomal gene expression in its bacterial host

scientific article

Unveiling the Epigenetic Impact of Vegan vs. Omnivorous Diets on Aging: Insights from the Twins Nutrition Study (TwiNS)

Vulnerability of the industrialized microbiota

scientific article

Western diet regulates immune status and the response to LPS-driven sepsis independent of diet-associated microbiome

scientific article published on 11 February 2019

When Gut Microbiota Creep into Fat, the Fat Creeps Back

scientific article published on 01 October 2020

Your gut microbiome, deconstructed

scientific article

uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea

article

Zdravá střeva: poznejte tajemství mikrobioty a získejte dlouhodobou kontrolu nad svou váhou, náladou a zdravím ⬇️

book edition published in 2016

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