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List of works by Nicholas Provart

50 years of Arabidopsis research: highlights and future directions

scientific article published on 14 October 2015

A Human "eFP" Browser for Generating Gene Expression Anatograms

scientific article

A comparative genomic analysis of ESTs from Ustilago maydis

scientific article

A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches

scientific article published in December 2004

A gene expression atlas for kiwifruit (Actinidia chinensis) and network analysis of transcription factors

scientific article

A gene expression map of shoot domains reveals regulatory mechanisms

scientific article published in Nature Communications

A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.

scientific article published in May 2014

A predicted interactome for Arabidopsis.

scientific article

A predicted protein interactome for rice

scientific article

Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins

scientific article (publication date: 22 May 2009)

An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets

scientific article

An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data

scientific article published on 23 August 2019

An Arabidopsis lipid map reveals differences between tissues and dynamic changes throughout development

scientific article

An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response

scientific article published on 26 March 2020

An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana

scientific article

An extracellular network of Arabidopsis leucine-rich repeat receptor kinases.

scientific article published on 10 January 2018

An updated gene atlas for maize reveals organ-specific and stress-induced genes

scientific article published on 22 January 2019

Analyses of Protein Interaction Networks Using Computational Tools

scientific article published on 01 January 2018

Analysis of gene expression patterns during seed coat development in Arabidopsis.

scientific article published on 7 June 2011

Anno genominis XX: 20 years of Arabidopsis genomics

scientific article

Arabidopsis bioinformatics: tools and strategies

scientific article

Araport Lives: An Updated Framework for Arabidopsis Bioinformatics

scientific article published on 22 July 2020

AtMetExpress development: a phytochemical atlas of Arabidopsis development ⬇️

article

BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species ⬇️

scientific article published on July 12, 2012

Bioinformatic Tools in Arabidopsis Research

scientific article published on 01 January 2021

Bioinformatic tools in Arabidopsis research

scientific article published on 01 January 2014

BlastDigester--a web-based program for efficient CAPS marker design

scientific article published in July 2004

C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families

scientific article published on 26 June 2007

CapsID: a web-based tool for developing parsimonious sets of CAPS molecular markers for genotyping

scientific article published on 10 May 2006

Changes in stomatal function and water use efficiency in potato plants with altered sucrolytic activity ⬇️

scientific article published on November 23, 2011

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

scientific article published on 27 August 2009

Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements

scientific article

Comparative analyses of C₄ and C₃ photosynthesis in developing leaves of maize and rice

scientific article published on 12 October 2014

Complexity and specificity of the maize (Zea mays L.) root hair transcriptome

scientific article published on 08 April 2017

Correlation networks visualization

scientific article published on 29 October 2012

Current status of the multinational Arabidopsis community

scientific article published on 01 July 2020

Developmental transcriptional profiling reveals key insights into Triticeae reproductive development

scientific article

Developments in plant and animal genome research

scientific article

Editorial: Resistance to Salinity and Water Scarcity in Higher Plants. Insights From Extremophiles and Stress-Adapted Plants: Tools, Discoveries and Future Prospects

article

Elevated tyrosine results in the cytosolic retention of 3‐deoxy‐ d ‐arabino‐heptulosonate 7‐phosphate synthase in Arabidopsis thaliana

scientific article

Elucidating the germination transcriptional program using small molecules

scientific article

Embryogenesis: Pattern Formation from a Single Cell ⬇️

scientific article published on November 12, 2009

Evolutionary divergence in embryo and seed coat development of U’s Triangle Brassica species illustrated by a spatiotemporal transcriptome atlas

scientific article

Expansion and diversification of the Populus R2R3-MYB family of transcription factors

scientific article published on 17 December 2008

Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots

scientific article published on 27 January 2020

Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon

scientific article published on 15 June 2017

Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses.

scientific article

Extreme breeding: Leveraging genomics for crop improvement

scientific article

Forward and reverse genetics to identify genes involved in the age-related resistance response in Arabidopsis thaliana.

scientific article published in September 2009

Gene Slider: sequence logo interactive data-visualization for education and research

scientific article

Gene co-expression analysis of tomato seed maturation reveals tissue-specific regulatory networks and hubs associated with the acquisition of desiccation tolerance and seed vigour

scientific article

Gene expression analyses for elucidating mechanisms of hormonal action in plants

scientific article published on 01 January 2009

Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures

scientific article published on 15 May 2003

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

scientific article

Genotype and time of day shape the Populus drought response

scientific article published on 8 August 2009

High Temporal-Resolution Transcriptome Landscape of Early Maize Seed Development

article

Incipient stem cell niche conversion in tissue culture: using a systems approach to probe early events in WUSCHEL‐dependent conversion of lateral root primordia into shoot meristems ⬇️

scientific article published on March 1, 2013

Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways

scientific article

Innovation, Conservation and Repurposing of Gene Function in Plant Root Cell Type Development

scientific article

Innovation, conservation, and repurposing of gene function in root cell type development

Innovation, conservation, and repurposing of gene function in root cell type development

scientific article

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism

scientific article published on 01 March 2020

Map of physical interactions between extracellular domains of Arabidopsis leucine-rich repeat receptor kinases

scientific article published on 26 February 2019

MetaBase—the wiki-database of biological databases

scientific article

Multiple horizontal gene transfer events and domain fusions have created novel regulatory and metabolic networks in the oomycete genome

scientific article published on 2 July 2009

NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction

scientific article

New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana

scientific article

New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes

scientific article

Next‐generation mapping of Arabidopsis genes ⬇️

scientific article published on July 18, 2011

Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula

scientific article published on 10 January 2017

PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya

scientific article published on 19 January 2011

Polymerization of glucans by enzymatically active membranes

scientific article published in September 2002

Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer

scientific article published on 24 January 2019

Publisher Correction: An extracellular network of Arabidopsis leucine-rich repeat receptor kinases

scientific article published in Nature

RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions.

scientific article

Regulation of Cell Type-Specific Immunity Networks in Arabidopsis Roots

scientific article published on 22 July 2020

Regulation of Root Angle and Gravitropism

scientific article

Seed bioinformatics

scientific article published in January 2011

Sequence analysis and regulation of expression of a gene coding for carbonic anhydrase in Chlamydomonas reinhardtii

scientific article

Systems approaches to understanding cell signaling and gene regulation

scientific article published in October 2004

The Bio-Analytic Resource for Plant Biology

scientific article published on January 2017

The Bio-Analytic Resource: Data visualization and analytic tools for multiple levels of plant biology

scientific article

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

scientific article published on 01 July 2005

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

scientific article published in December 2017

The Transcriptional Landscape of Polyploid Wheats and Their Diploid Ancestors during Embryogenesis and Grain Development

scientific article published on 18 October 2019

The developmental dynamics of the maize leaf transcriptome

scientific article

The developmental transcriptome atlas of the biofuel crop Camelina sativa

scientific article

The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis

scientific article

The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome.

scientific article

The red flower wintersweet genome provides insights into the evolution of magnoliids and the molecular mechanism for tepal color development

scientific article

The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature.

scientific article

The transcriptional landscape of polyploid wheat

scientific article

Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape

scientific article

Toward a data infrastructure for the Plant Cell Atlas

scientific article published on 6 October 2022

Transcriptional control of nutrient partitioning during rice grain filling

scientific article published in January 2003

Transcriptional networks: The next generation

scientific article

Transcriptional responses to low temperature and their regulation in Arabidopsis

scientific article

Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Sub-domain Adjacent to the Embryo Scutellum

scientific article published on 21 February 2020

Tung Tree (Vernicia fordii) Genome Provides A Resource for Understanding Genome Evolution and Improved Oil Production

scientific article published on 26 March 2020

Vision, challenges and opportunities for a Plant Cell Atlas

scientific article

Web-queryable large-scale data sets for hypothesis generation in plant biology

scientific article

ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium

scientific article published on 7 October 2016

ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium

scientific article published on 29 December 2016

ePlant and the 3D data display initiative: integrative systems biology on the world wide web

scientific article (publication date: 10 January 2011)

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

scientific article published on 14 August 2017

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